Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical p...    45   3e-05
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b prote...    28   3.9  
Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical ...    28   5.1  
AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical
           protein C18E9.2a protein.
          Length = 364

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = +1

Query: 391 RKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVLG 513
           +K++L +H  Q F+D  D YVW++DP P    + G+L+++G
Sbjct: 158 KKVKLLVHEVQAFVDDKDVYVWVFDPTPLMKKIIGVLMLVG 198



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 29  IAKWLKANVPTKKTKFLNHHVVIFHRYKGCRCLVDFKMGDRQESSVHNKNRSD 187
           IAK+++ N PT  T F  + V  F   K    L + K G++ +     K R D
Sbjct: 24  IAKYIRFNCPTATTMFEGNEVHYFSGNKAVDTLWESKYGNKAKKDAMFKTRDD 76


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 435 YGRCLRLDLRPEALVLLGLWDSG 503
           +GR    DL+PE LV++G+W  G
Sbjct: 19  FGRKCDADLKPEKLVVVGVWKRG 41


>AF040653-7|AAB95027.2|  334|Caenorhabditis elegans F-box b protein
           protein 54 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 71  KFLNHHVVIFHRYKGCRCLVDFKMGDRQESSV 166
           ++LNH V IFH  K C   +DF+  +   S V
Sbjct: 105 RWLNHMVYIFHPSKNCVVSLDFRNMEVDASQV 136


>Z50028-5|CAA90338.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 553 NSGRPEWEHATVIVPRRPESHRPSSTKA 470
           N   P+W     + PRRP S  PSST +
Sbjct: 606 NPSAPDWYAPPPLPPRRPASVGPSSTSS 633


>AL032624-4|CAA21522.1|  661|Caenorhabditis elegans Hypothetical
           protein F46F6.1a protein.
          Length = 661

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 553 NSGRPEWEHATVIVPRRPESHRPSSTKA 470
           N   P+W     + PRRP S  PSST +
Sbjct: 606 NPSAPDWYAPPPLPPRRPASVGPSSTSS 633


>AL032624-1|CAA21521.1|  209|Caenorhabditis elegans Hypothetical
           protein F46F6.1b protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 553 NSGRPEWEHATVIVPRRPESHRPSSTKA 470
           N   P+W     + PRRP S  PSST +
Sbjct: 154 NPSAPDWYAPPPLPPRRPASVGPSSTSS 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,405,496
Number of Sequences: 27780
Number of extensions: 206615
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)