Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.89 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -1

Query: 553 NSGRPEWEHATVIVPRRPESHRPSSTKASGRRSRRKHRPY 434
           N     W+ + V     P    P S K SGRR RR+   Y
Sbjct: 379 NPAMGHWQMSCVACSPPPRQ-TPPSRKESGRRRRRRTPRY 417


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 25  THREMAQSEC-TNEEDKISKSPRGNIS 102
           T  E  ++ C T +ED I  +P GN+S
Sbjct: 150 TPTERLEALCWTQDEDVICSTPIGNLS 176


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 25  THREMAQSEC-TNEEDKISKSPRGNIS 102
           T  E  ++ C T +ED I  +P GN+S
Sbjct: 203 TPTERLEALCWTQDEDIICSTPIGNLS 229


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 436 TVDAYVWIYDPKPWYYWVCGILVVLG 513
           ++D Y+ I DP  +  WV   + V G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAG 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,657
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)