Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00645
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08870.1 68416.m01031 lectin protein kinase, putative similar...    27   6.3  
At2g16030.1 68415.m01838 expressed protein                             27   6.3  

>At3g08870.1 68416.m01031 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 693

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 50  NVPTKKTKF-LNHHVVIFHRYKGCRCLVDFKMGDRQESSVHNKNRSDSLLASMLCINSST 226
           N PT    F L   V+ FH   G  C+VD  +G    SS + +    +L+  +LC +   
Sbjct: 568 NKPTNAENFFLADWVMEFHTNGGILCVVDQNLG----SSFNGREAKLALVVGLLCCHQKP 623

Query: 227 GPRRSL 244
             R S+
Sbjct: 624 KFRPSM 629


>At2g16030.1 68415.m01838 expressed protein
          Length = 231

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 511 PRRPESHRPSSTKASGRRSRRKHRPYPKKLA 419
           P +P +H P ST  S   S R+H P PKK A
Sbjct: 41  PSKPHTHFPRSTCDS---SPRQHLPLPKKNA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,929,190
Number of Sequences: 28952
Number of extensions: 193624
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)