Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00643
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 28 1.2
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 2.1
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.1
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.1
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 3.7
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 3.7
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 26 4.9
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 26 4.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.4
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 6.4
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 6.4
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 8.5
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 25 8.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.5
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 564 FCCPREQILR--PLSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 713
F CP L P++L C GTVC R+ ++S S SR +H P
Sbjct: 17 FICPGCNCLPDWPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKP 68
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +3
Query: 444 VSQYTPEEIVVKTVDNKLLVHANTRRNLIRNLCTE 548
+S E+V+ + NK+L++A+ +R++I +L TE
Sbjct: 453 ISGSDTNEVVLWHIPNKVLINASRKRSVILHLPTE 487
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -2
Query: 603 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLRG 502
+L + G P+G+ +S++ +L TDF +++ + + G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDG 360
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +2
Query: 494 ITGPRKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEAPLPQLAITDRN 673
++ +K K+D +S + E ++ ++ + +P ++ SLS D L + + N
Sbjct: 119 VSEDQKQLNKTDDESTFIESHQIYIQGETKSPSSVSQSLSGDPSLKPAEVFDRKQSAEIN 178
Query: 674 IPIQK 688
PI+K
Sbjct: 179 SPIEK 183
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 175 GDFSVIDTEFSS-IRERFDAEMRKMEEE 255
G F+ +D+E IRE +AE++KMEE+
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEK 495
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 522 NLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWK--RHCHNSPSRTGTFLSRS 689
+L+ C E + +I R L +C G LP + +H H++P R+ S+S
Sbjct: 391 DLLLKFCKETIVPYYSSKFPRITRNLLEKCNGLDLLPERSHKHRHSAPPRSKLISSKS 448
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 512 HEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTVEA-PLPQL 655
H+ D +S+YR R L + E + S S + +LTV + P P L
Sbjct: 51 HKVHEDVESIYRRLERLQLCKRNEEEEMLNSDAS-EAMLTVSSVPSPTL 98
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 512 HEEKSDTKSVYREYNREFLLPKGTNP 589
H ++S KSV RE NR + L K NP
Sbjct: 360 HHKESIIKSVIREANRVYHLWKDCNP 385
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 423 TLKLRFDVSQYTPEEIVVKTVDNKLLVHANTRRNLIRNLCTE 548
T L+ V + T ++ KT+D +LL+ + R I N C E
Sbjct: 95 TRSLQLSVKKTTRQQ---KTLDGQLLILKDNERTTISNRCAE 133
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 498 LVHANTRRNLIRNLCTENTTGSFCCPR 578
++ N R L+ + EN+TG CPR
Sbjct: 179 IIRNNANRILLESCYCENSTGMSTCPR 205
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 624 CLPWKRHCHNSPSRTGTFLSRSTERSHH 707
CL W RH +S SR+G ++H
Sbjct: 268 CLSWNRHVLSSGSRSGAIHHHDVRIANH 295
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 378 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 494
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -3
Query: 560 PCCILCTQISYQISPRVCVDQ*FVVDSLNNDLFGSILADIKAKLESLAVTLVLNE 396
PC +L Y +SP++CV++ + D + + G + + +A E + ++L E
Sbjct: 692 PCQLLVGD--YILSPKICVERKSIRDLIQSLSNGRLYSQCEAMTEYYEIPVLLIE 744
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 156 KYPHQAWRFFGYRY 197
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,676
Number of Sequences: 5004
Number of extensions: 58618
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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