Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00643
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 37 0.015
03_02_0484 + 8805053-8805538 37 0.019
03_02_0483 - 8804021-8804485 36 0.044
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 30 1.7
04_04_0772 + 27970494-27972875 30 2.2
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006... 29 5.1
07_03_1498 + 26995209-26995752,26995945-26996513 29 5.1
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 8.9
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490 28 8.9
01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264 28 8.9
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +2
Query: 506 RKHEEKSDT-KSVYR---EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 643
R+ EEKSD V R ++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 95 REQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 143
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.7 bits (81), Expect = 0.019
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Frame = +2
Query: 494 ITGPRKHEEKSDTKSVYR------EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 643
I+G R E++ T +R ++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 91 ISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 145
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.5 bits (78), Expect = 0.044
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Frame = +2
Query: 494 ITGPRKHEEKSDTKSVYR------EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 643
I+G R E++ T +R ++ R F LP+ T PE IK+S+ +GVLTV P
Sbjct: 84 ISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVP 138
>01_06_1473 -
37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +1
Query: 34 PSSAYYSSETSFTRERFSVCLVSTISTRQIT*KMADSGLKRNIPIKLGDFSVIDTEFSSI 213
PSS+ + +T E+ S S+ S R ++A SGLK I KL DF+V + + +
Sbjct: 403 PSSSIFPRDTISRLEKNSTTSDSSPSLRASLHELA-SGLKSEIADKLSDFNVSNFAMTPV 461
Query: 214 RERFDAE 234
+ + E
Sbjct: 462 KRNYAFE 468
>04_04_0772 + 27970494-27972875
Length = 793
Score = 29.9 bits (64), Expect = 2.2
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Frame = +3
Query: 345 DSRQLAEPSHWDSLNSPLIQDEGDGK-TLKLRFDVSQYTPEEIV------VKTVDNKLLV 503
D L+EP + + PL+ D GDG T + T + I+ V KL++
Sbjct: 380 DGESLSEPKDFGAEMRPLVHDVGDGMCTTESVLRAMNVTGKIIICDAGGDVSVAKAKLVL 439
Query: 504 HANTRRNLIRNLCTENTTGSFCCPREQILRPLSLRCPGTVCLPWKRHCHNSPSRTGTFLS 683
+ ++ GS PR +L +++ P + K + ++PS T F+
Sbjct: 440 RSGAAGMIV---IAPQVYGSVIVPRPHVLP--TVQMPFMIGQKIKAYIRSTPSPTANFIF 494
Query: 684 RSTERSHHSP 713
+ T SP
Sbjct: 495 KGTVFKAKSP 504
>12_01_1050 +
10798692-10798867,10798972-10799169,10799617-10800649,
10800866-10801219
Length = 586
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 616 PGQRRLNGLRI-CSLGQQKLPVVFSVHRFRIRFLLVFAWTSNLLSTVLTTISS 461
P + R+ G R + + +P V ++H + +RF L FA SNL + L TIS+
Sbjct: 13 PHRARVQGCRSGAGVHHRAMPTVPAIHVWAVRFSLDFAVASNL--SGLRTISA 63
>07_03_1498 + 26995209-26995752,26995945-26996513
Length = 370
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 351 RQLAEPSHWDSLNSPLIQDEGDGKTLKLRFDVSQYTPEE 467
++L P HW + P + + G G+ RF + TP E
Sbjct: 245 KELEAPQHWSEMRCPQLANLGSGRFCIARFFHTWTTPME 283
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -2
Query: 678 GMFLSVMASCGNGASTVSTPSRDSEDLMASGFVPLGNKNSLLYSLYTDFVSDFSS--CLR 505
G S +A+ G G V SR EDL+ +G+ SL + F D C++
Sbjct: 76 GATASAIAAPGEGMLGVEDASRTCEDLLLQLIREVGSSGSLEKDMLPPFRQDIQKFICIK 135
Query: 504 GPVI 493
P +
Sbjct: 136 RPTL 139
>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
Length = 309
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 673 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 578
VPV DG +LW WR +G+ + G G CS
Sbjct: 145 VPVADGGVSTDLWAWRKYGQKPIKGSPYPRGYYKCS 180
>01_05_0755 - 24941711-24942167,24942591-24942719,24942840-24943264
Length = 336
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 673 VPVRDG----ELWQWRFHGKHTVPGQRRLNGLRICS 578
VPV DG +LW WR +G+ + G G CS
Sbjct: 156 VPVADGGVSSDLWAWRKYGQKPIKGSPYPRGYYKCS 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,542,797
Number of Sequences: 37544
Number of extensions: 376576
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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