Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00643
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 414 DGKTLKLRFDVSQYTPEEIVVKTVDNKLLVHANTRRNLIR 533
           +G T K    V+       + +  DN+LLVH +T ++ ++
Sbjct: 88  EGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTNKSDVK 127


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 654 SCGNGASTVSTPSRDSEDL 598
           SCG G + ++TP  DS+ +
Sbjct: 369 SCGGGPTILTTPGLDSDGI 387


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 648 HNSPSRTGTFLSRSTERSHHSP 713
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 420 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHANTRRNLIRNLCTE 548
           K  K   DV    PE++ +   DNKL   +N   N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLA--SNAGYNVIEQVRTK 114


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 420 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHANTRRNLIRNLCTE 548
           K  K   DV    PE++ +   DNKL   +N   N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLA--SNAGYNVIEQVRTK 114


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 420 KTLKLRFDVSQYTPEEIVVKTVDNKLLVHANTRRNLIRNLCTE 548
           K  K   DV    PE++ +   DNKL   +N   N+I  + T+
Sbjct: 74  KVGKKEADVVAVDPEDMYLAVKDNKLA--SNAGYNVIEQVRTK 114


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 494 FVVDSLNNDLF 462
           F+VD L NDLF
Sbjct: 96  FIVDRLRNDLF 106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 597 LSLRCPGTVCLPWKRHCHNSPSRTGTFLSRSTERSHHSP 713
           L +R P    L W     N    T T+    TE   H P
Sbjct: 346 LMMRRPKKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLP 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,182
Number of Sequences: 438
Number of extensions: 3967
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)