Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00643
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    31   0.60 
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    29   4.3  
At5g45270.1 68418.m05556 WRKY family transcription factor contai...    28   5.6  
At4g18250.1 68417.m02710 receptor serine/threonine kinase, putat...    28   7.4  
At1g35515.1 68414.m04409 myb family transcription factor (MYB8) ...    28   7.4  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    27   9.8  
At4g21370.1 68417.m03088 S-locus protein kinase, putative simila...    27   9.8  
At4g19390.1 68417.m02854 expressed protein                             27   9.8  
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S...    27   9.8  
At2g44890.1 68415.m05588 cytochrome P450 family protein contains...    27   9.8  

>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
 Frame = +2

Query: 494 ITGPR--KHEEKSDT-KSVYR---EYNREFLLPKGTNPEAIKSSLSRDGVLTVEAP 643
           I+G R  + EEK DT   V R   +++R+F LP+    + +K+S+  +GVLTV  P
Sbjct: 85  ISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASM-ENGVLTVTVP 139


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 158 ISPSSLAIFRLSIQNSQASESASMPK*GRWKKNEQIQIRTHEQRKQ 295
           +SP  L  F + I + + SES S  K G  ++NE+ +I   E+ ++
Sbjct: 121 LSPVDLKRFAMQILSQRDSESVSETKIGIEEENEESEILAEEKEEE 166


>At5g45270.1 68418.m05556 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 114

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 667 VRDGELWQWRFHGKHTVPGQRRLNGLRICS 578
           + +G+LW WR +G+  + G R   G   C+
Sbjct: 31  IDEGDLWTWRKYGQKDILGSRFPRGYYRCA 60


>At4g18250.1 68417.m02710 receptor serine/threonine kinase, putative
           similar to to receptor serine/threonine kinase PR5K
           gi|1235680|gb|AAC49208
          Length = 853

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 447 SQYTPEEIVVKTVDNKLLVHANTRRNLI--RNLCTENTTGSFCCPREQILRPLSLRCPGT 620
           SQ +     +KT + + +   ++   LI  R LC+ ++TG+F C          + CPGT
Sbjct: 242 SQVSTTGFTLKTGEERAINAPSSWYGLISARTLCSNDSTGNFSCATGD-CESGEIECPGT 300


>At1g35515.1 68414.m04409 myb family transcription factor (MYB8)
           similar to DNA-binding protein GB:AAA98761 GI:1020155
           from [Arabidopsis thaliana]
          Length = 212

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 486 DNKLLVHANT--RRNLIRNLCTENTTGSFCCPREQILRP----LSLRCPGTVCLPWKRHC 647
           DN++  + NT  +R L+       T GS   P+     P    L    PG+V L  +  C
Sbjct: 101 DNEIKNYWNTHIKRKLLNRGIDPKTHGSIIEPKTTSFHPRNEDLKSTFPGSVKLKMETSC 160

Query: 648 HNSPSRTGT 674
            N  S +GT
Sbjct: 161 ENCASTSGT 169


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65 protein,
            Arabidopsis thaliana, EMBL:AJ001729; contains Pfam
            profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 245  IFLISASKRSLMLENSVSITEKSPSLMGI 159
            + ++S SK+  +LE+   +TE+ PSL+ I
Sbjct: 1086 VHVLSKSKKKALLESLDELTERMPSLLDI 1114


>At4g21370.1 68417.m03088 S-locus protein kinase, putative similar
           to SRKa [Arabidopsis lyrata] gi|13620927|dbj|BAB40986;
           contains Pfam domains PF00954: S-locus glycoprotein
           family, PF00069: Protein kinase domain and PF01453:
           Lectin (probable mannose binding)
          Length = 844

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 472 LLRLSTTNYWSTQTRGEI*YEICVQRIQQGVFVAQGNK 585
           +L  S T+ WST   G +   +  + +  G FV +G+K
Sbjct: 108 ILDNSDTHVWSTNLTGAVRSSVVAELLDNGNFVLRGSK 145


>At4g19390.1 68417.m02854 expressed protein
          Length = 273

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 550 FSVHRFRIRFLLVFAWTSNLLSTVLTTISSGVYWL 446
           +SV+R ++ FLLV A    LL TV+     G+Y L
Sbjct: 141 YSVNRGKVIFLLVEAIDIYLLGTVMLVFGLGLYEL 175


>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
           SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
           discoideum}; contains Pfam profile PF01466: Skp1 family,
           dimerisation domain
          Length = 351

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 607 RRLNGLRICSLGQQKLPVVFSVH 539
           RRLN   + S+GQ++ PV FS++
Sbjct: 313 RRLNSSWVLSIGQERQPVNFSIN 335


>At2g44890.1 68415.m05588 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 505

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 494 ITGPRKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSRDGVLTV 634
           IT  RK   K    SV  +   +FLL    +PE +     RD +L V
Sbjct: 250 ITTKRKELSKEQNTSVREDILSKFLLESEKDPENMNDKYLRDIILNV 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,622
Number of Sequences: 28952
Number of extensions: 307277
Number of successful extensions: 988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)