Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00642
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 148 7e-37
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 130 1e-31
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 8e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 87 1e-18
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 76 5e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 72 6e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 71 1e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 68 9e-13
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 62 5e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 60 2e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 2e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 3e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 56 5e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 54 1e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 4e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 52 8e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 8e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 1e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 2e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 3e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 41 1e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 2e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.003
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 29 0.68
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.6
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 27 2.7
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 2.7
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom... 27 2.7
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.8
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 6.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 8.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 148 bits (358), Expect = 7e-37
Identities = 71/84 (84%), Positives = 80/84 (95%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQSGTGKTATFSIS+LQ+IDTS++
Sbjct: 27 KPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLK 86
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
+CQALILAPTRELAQQIQKVV+AL
Sbjct: 87 QCQALILAPTRELAQQIQKVVVAL 110
Score = 46.0 bits (104), Expect = 4e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D +N +CHACIGGT VR+D+ L+ GVHV
Sbjct: 112 DLMNVECHACIGGTLVRDDMAALQAGVHV 140
Score = 31.5 bits (68), Expect = 0.097
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = +2
Query: 191 MDPGTLDTDWDQVVETFDDMNPK 259
++ ++T++D+V++TFDDMN K
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLK 27
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 130 bits (315), Expect = 1e-31
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
KE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQAQSGTGKTATFSI ILQ ID S+R
Sbjct: 29 KEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVR 88
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
+ QALIL+PTRELA QIQ VV+AL
Sbjct: 89 DTQALILSPTRELAVQIQNVVLAL 112
Score = 48.4 bits (110), Expect = 8e-07
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
DH+N +CHACIGGT+V DI++L+ G HV
Sbjct: 114 DHMNVQCHACIGGTSVGNDIKKLDYGQHV 142
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 88.2 bits (209), Expect = 8e-19
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELL GI+ GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I L+++DT
Sbjct: 52 KRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKS 111
Query: 436 ECQALILAPTRELAQQIQKV 495
+ Q LIL PTRELA Q +V
Sbjct: 112 KIQTLILVPTRELALQTSQV 131
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 513 HLNAKCHACIGGTNVREDIRQLETGVHV 596
H+N K GGT +R+DI +L VH+
Sbjct: 138 HMNVKVMVTTGGTTLRDDIIRLNDTVHI 165
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 87.4 bits (207), Expect = 1e-18
Identities = 43/85 (50%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Frame = +1
Query: 250 EPKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSISILQQID 423
E K ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++++L ++D
Sbjct: 120 ELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD 179
Query: 424 TSIRECQALILAPTRELAQQIQKVV 498
S+ + QA+ LAP+RELA+QI VV
Sbjct: 180 ASVPKPQAICLAPSRELARQIMDVV 204
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 75.8 bits (178), Expect = 5e-15
Identities = 42/78 (53%), Positives = 49/78 (62%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQI+
Sbjct: 59 KPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDG 118
Query: 436 ECQALILAPTRELAQQIQ 489
E L+L TRELA QI+
Sbjct: 119 EVSVLVLCHTRELAFQIK 136
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 72.1 bits (169), Expect = 6e-14
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ------QIDT 426
L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL+ QID
Sbjct: 25 LQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDE 84
Query: 427 SIRECQALILAPTRELAQQIQKVV 498
+ R AL+L PTRELAQQ+ V+
Sbjct: 85 NQRGIFALLLVPTRELAQQVYNVL 108
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 70.9 bits (166), Expect = 1e-13
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI-- 432
+ LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++ + +++
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLAN 137
Query: 433 RECQALILAPTRELAQQIQKVV 498
+ALIL+P RELA Q KVV
Sbjct: 138 SNTRALILSPNRELALQTVKVV 159
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 68.1 bits (159), Expect = 9e-13
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
+EL GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ +
Sbjct: 55 DELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSP 114
Query: 439 CQALILAPTRELAQQIQK 492
A++LAPTRELA QI +
Sbjct: 115 FFAVVLAPTRELAYQISE 132
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 62.5 bits (145), Expect = 5e-11
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIR 435
+L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+++ +
Sbjct: 270 ILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVP 329
Query: 436 ECQALILAPTRELAQQIQKVVIALVIT*MLNAMLAL-VAPMSVKI 567
+ LIL PTRELA Q V A I + M+ L + +S+K+
Sbjct: 330 TTRVLILCPTRELAMQCHSV--ATKIASFTDIMVCLCIGGLSLKL 372
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/77 (42%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIR 435
E+L + GF KP IQ I G D+I +A +G+GKT F I IL+ + +
Sbjct: 132 EMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAK 191
Query: 436 ECQALILAPTRELAQQI 486
QAL++APTRELA QI
Sbjct: 192 YVQALVVAPTRELAHQI 208
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.8 bits (131), Expect = 2e-09
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 8/84 (9%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID--TSIR 435
E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA F I ++ I +
Sbjct: 259 EMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLT 318
Query: 436 ECQ------ALILAPTRELAQQIQ 489
E A++LAPTRELAQQIQ
Sbjct: 319 ESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 56.4 bits (130), Expect = 3e-09
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+++
Sbjct: 18 LIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIF 77
Query: 445 ALILAPTRELAQQIQKVVIAL 507
ALIL PTRELA QI + AL
Sbjct: 78 ALILTPTRELAIQIDEQFAAL 98
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 5e-09
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTS 429
E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +I +L +
Sbjct: 98 ENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFK 157
Query: 430 IRE-CQALILAPTRELAQQI 486
R +I++PTRELA QI
Sbjct: 158 PRNGTGVIIISPTRELALQI 177
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 54.4 bits (125), Expect = 1e-08
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Frame = +1
Query: 277 IYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ-- 444
I + G+EKP++IQ +AI GRDVI A++G+GKT F + + + I ++ +
Sbjct: 433 INSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGP 492
Query: 445 -ALILAPTRELAQQI 486
A+I+ PTRELA QI
Sbjct: 493 IAIIMTPTRELAVQI 507
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIR 435
L + A GF+K + +Q AI ++ +D++ +A +G+GKT + + ++ DT
Sbjct: 12 LKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDET 71
Query: 436 ECQALILAPTRELAQQIQKVVIALV 510
ALI+APTRELA QI V L+
Sbjct: 72 GLGALIVAPTRELATQIFNVTKELL 96
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 51.6 bits (118), Expect = 8e-08
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
+L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ + + I+
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 445 -----ALILAPTRELAQQIQK 492
L+LAPTRELA QIQ+
Sbjct: 193 GDGPIVLVLAPTRELAVQIQQ 213
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 8e-07
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Frame = +1
Query: 310 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELA 477
IQ++ I ++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 478 QQIQKVVIAL 507
Q + ++ +
Sbjct: 125 IQTFETLVKI 134
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.0 bits (109), Expect = 1e-06
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +1
Query: 250 EPKEELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQ 414
+P EE GI +K + + QR +P I RD++A A +G+GKT + ILQ
Sbjct: 47 DPIEEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQ 106
Query: 415 QIDTSI-RECQALILAPTRELAQQIQK 492
++ + +A+I+APTREL +QI +
Sbjct: 107 KLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAP 462
+++P+ IQ + GRDV+ A++G+GKT F I LQ ++ + + L+++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 463 TRELAQQIQKVVIALV 510
TRELA Q + + +L+
Sbjct: 245 TRELAIQTYENLNSLI 260
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 44.0 bits (99), Expect = 2e-05
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL----------- 411
LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F IL
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAV 239
Query: 412 ---QQIDTSIRECQA----LILAPTRELAQQIQK 492
Q R +A LILAPTREL QI +
Sbjct: 240 PVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 450
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 451 ILAPTRELAQQI 486
IL+PTRELA QI
Sbjct: 117 ILSPTRELALQI 128
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Frame = +1
Query: 301 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 453
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 454 LAPTRELAQQIQKV 495
+APTREL QQI V
Sbjct: 222 MAPTRELCQQIYNV 235
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 429
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 430 IRECQALILAPTRELAQQIQK 492
+ + +++ PTREL Q+ K
Sbjct: 203 VPRLRCVVIVPTRELTVQVAK 223
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.3 bits (80), Expect = 0.003
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 259 EELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
+EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 297 QELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDN 355
Query: 436 ECQALILAPTRELAQQIQKVVIALV 510
+ A + PT+ LAQ +K +I ++
Sbjct: 356 QSTAFFVFPTKSLAQDQKKSLIDIL 380
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 405 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSSCDHLNAKCHACIG 545
D+ TNR + SSFD S P+N++G ++ ++ + IG
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNTSENADELVEPPIG 533
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 373 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 489
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 73 NILIKNTCATKTCSAIVSLPAPR 5
N LIKNTCAT + SLP R
Sbjct: 266 NQLIKNTCATISAVPFSSLPLDR 288
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 180 DLREWTLGHLTPT 218
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 308 AEGFSKP*AYMPLNNSSLGSCHRRFRQLDPSRCQVSQGPFPEVHRNYLDP 159
A + P Y+P N + +G + F DP GP P RN P
Sbjct: 293 APSITVPPNYIP-NTAMMGPSYSSFGDTDPRTYPAGMGPNPTAARNGFYP 341
>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 586 PVSSWRISSRTLVPPMQAWHLAFK*SQELSPPSEFVGPALLWEPGS 449
P+ W S+ LV Q +H SQ+++PPS P L W+ S
Sbjct: 47 PIMYWANVSKELV--QQVYH-----SQKIAPPSNTHSPFLFWKSQS 85
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 200 QGPFPEVHRNYLDPSMAHFWNPLANL 123
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/72 (20%), Positives = 36/72 (50%)
Frame = +2
Query: 212 TDWDQVVETFDDMNPKKNC*EAYTPMVLKNLLQSSNAQ*CLASKDAMLSLKPSQELEKLL 391
TD+ +V+E ++ ++ +N E + +++S S+D+ PS + + +
Sbjct: 168 TDYKKVIERYEKLDELQNKGEENRDASENSAVKASRNSTVSGSEDSASITTPSLRMREDV 227
Query: 392 LSLYRFYNKSIQ 427
++ R NK++Q
Sbjct: 228 VAYLRADNKNLQ 239
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 447 FDPGSHKRAGPTNSEGGDSSCDHLNAKCHACIGGTNVRE 563
F P S +S GG + N+ C +C+G VRE
Sbjct: 269 FIPPSFHMQTTCDSCGGTGTTIPPNSACRSCMGSGTVRE 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,358
Number of Sequences: 5004
Number of extensions: 62096
Number of successful extensions: 201
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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