Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00642
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 120 7e-28
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 89 3e-18
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 89 3e-18
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 79 4e-15
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 74 1e-13
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 69 2e-12
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 64 6e-11
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 60 2e-09
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 59 2e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 54 7e-08
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 50 2e-06
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 49 3e-06
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 48 4e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 46 2e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 42 3e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 42 5e-04
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 38 0.005
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 35 0.057
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 31 0.53
SB_24825| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-29) 31 0.71
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 30 1.2
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 30 1.6
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 29 2.9
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 29 3.8
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 29 3.8
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 123 bits (296), Expect = 1e-28
Identities = 60/73 (82%), Positives = 67/73 (91%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTR 468
GFEKPSAIQQRAI P ++GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTR
Sbjct: 16 GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTR 75
Query: 469 ELAQQIQKVVIAL 507
ELA QIQKVV+AL
Sbjct: 76 ELANQIQKVVLAL 88
Score = 48.4 bits (110), Expect = 4e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+++ +CHACIGGTN+ EDIR+L+ G H+
Sbjct: 90 DYMSVQCHACIGGTNIGEDIRKLDYGQHI 118
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 120 bits (290), Expect = 7e-28
Identities = 72/112 (64%), Positives = 79/112 (70%), Gaps = 28/112 (25%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ----------------------GRDVIAQAQ 369
KE LLRGIYAYGFEKPSAIQQRAI PC Q RDVIAQAQ
Sbjct: 71 KEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLSARDVIAQAQ 130
Query: 370 SGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQQIQKVVIAL 507
SGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQQIQKVV+AL
Sbjct: 131 SGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLAL 182
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/29 (72%), Positives = 25/29 (86%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+++ KCHACIGGTNVRED +LE GVHV
Sbjct: 184 DYMHVKCHACIGGTNVREDRMKLEEGVHV 212
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +2
Query: 200 GTLDTDWDQVVETFDDMNPKK 262
G ++WD+VVE+FDDMN K+
Sbjct: 52 GKRQSNWDEVVESFDDMNLKE 72
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 88.6 bits (210), Expect = 3e-18
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELL GI+ GF+KPS IQ+ +I + GRD++A+A++GTGKTA + + +L++ DT+
Sbjct: 55 KRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKN 114
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
QAL+L PTRELA Q ++ I L
Sbjct: 115 CIQALVLVPTRELALQTSQICIEL 138
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 88.6 bits (210), Expect = 3e-18
Identities = 41/84 (48%), Positives = 60/84 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELL GI+ GF+KPS IQ+ +I + GRD++A+A++GTGKTA + + +L++ DT+
Sbjct: 55 KRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLERTDTTKN 114
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
QAL+L PTRELA Q ++ I L
Sbjct: 115 CIQALVLVPTRELALQTSQICIEL 138
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 78.6 bits (185), Expect = 4e-15
Identities = 41/81 (50%), Positives = 54/81 (66%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
LLRG+ GFEKPS IQ +AI G D+IAQA+SGTGKT FS+ L+ + T Q
Sbjct: 24 LLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENVITESNCIQ 83
Query: 445 ALILAPTRELAQQIQKVVIAL 507
+IL PTRE+A Q++ V+ A+
Sbjct: 84 IIILTPTREIAVQVKDVICAI 104
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/79 (48%), Positives = 48/79 (60%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLR I GFE PS +Q I I G D+I QA+SG GKTA F ++ LQQ++
Sbjct: 55 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDG 114
Query: 436 ECQALILAPTRELAQQIQK 492
+ L++ TRELA QI K
Sbjct: 115 QVSVLVMCHTRELAFQIHK 133
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 73.7 bits (173), Expect = 1e-13
Identities = 38/79 (48%), Positives = 48/79 (60%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLR I GFE PS +Q I I G D+I QA+SG GKTA F ++ LQQ++
Sbjct: 55 KPELLRAIVDCGFEHPSEVQHECIPQAILGMDIICQAKSGMGKTAVFVLATLQQLEPVDG 114
Query: 436 ECQALILAPTRELAQQIQK 492
+ L++ TRELA QI K
Sbjct: 115 QVSVLVMCHTRELAFQIHK 133
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDV--IAQAQSGTGKTATFSISILQQIDTSIRE 438
L RG+Y GF KPS IQ+ A+ + V IAQ+QSGTGKTA F +++L ++D +
Sbjct: 114 LRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTMLSRVDATKPY 173
Query: 439 CQALILAPTRELAQQIQKVVIAL 507
Q + L+PT ELA+Q KV A+
Sbjct: 174 PQVICLSPTYELARQTGKVAEAM 196
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/68 (47%), Positives = 45/68 (66%)
Frame = +1
Query: 283 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAP 462
A G +KP+ IQ + P +QGRD I A++G+GKTA F++ ILQ++ A++L P
Sbjct: 24 AMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTP 83
Query: 463 TRELAQQI 486
TRELA QI
Sbjct: 84 TRELAFQI 91
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 5/81 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL-----QQID 423
E+L+ I G+ +P+ +Q+ A+ + GRD++A AQ+G+GKTA + + +L Q ++
Sbjct: 488 EQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLN 547
Query: 424 TSIRECQALILAPTRELAQQI 486
R AL +APTRELA+QI
Sbjct: 548 APPRSPLALCVAPTRELAKQI 568
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 9/90 (10%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL--------- 411
+ +L + G++ P+ IQ++AI +Q RD+I A++G+GKTA F+I +L
Sbjct: 110 DSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKI 169
Query: 412 QQIDTSIRECQALILAPTRELAQQIQKVVI 501
++ + + + ALILAPTRELAQQI++ ++
Sbjct: 170 ERDNDADQGPYALILAPTRELAQQIEEEIL 199
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 268 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ----QIDTSIR 435
L G+ GF P+ IQ++ I + GRDV+ A++G+GKT F I I++ Q TS+
Sbjct: 62 LDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMD 121
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
AL+++PTRELA Q +V++ +
Sbjct: 122 GLGALVISPTRELAYQTFEVLVKI 145
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 54.8 bits (126), Expect = 5e-08
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------ 420
E L + ++KP+ +Q+ +I I GRDV+A AQ+G+GKTA F + ++ +
Sbjct: 720 EAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLPVMTSMMNAGLT 779
Query: 421 DTSIREC---QALILAPTRELAQQI 486
+S E QA+ +APTRELA QI
Sbjct: 780 SSSFSETQTPQAMCIAPTRELANQI 804
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 54.4 bits (125), Expect = 7e-08
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +1
Query: 271 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIREC 441
R + GF P+ IQ I + G+DV A A +GTGKTA F + IL+++ T
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAI 82
Query: 442 QALILAPTRELAQQ 483
+ L++ PTRELA Q
Sbjct: 83 RVLVITPTRELAIQ 96
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Frame = +1
Query: 337 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVV 498
+ G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK +
Sbjct: 316 MDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFI 371
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTS 429
E+ L+GI GF + IQ ++I P ++GRD++ A++G+GKT F + +L ++
Sbjct: 581 EKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFK 640
Query: 430 IRE-CQALILAPTRELAQQ 483
R +I++PTREL+ Q
Sbjct: 641 TRNGTGVIIISPTRELSLQ 659
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF----SISILQQIDT 426
E+++ I + +P+ IQ +A+ + GRD+I A++G+GKTA F + I+ Q +
Sbjct: 526 EQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPEL 585
Query: 427 SIRECQ-ALILAPTRELAQQI 486
+ + LI APTREL QQI
Sbjct: 586 QVGDGPIVLICAPTRELCQQI 606
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 51.2 bits (117), Expect = 6e-07
Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 20/96 (20%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDT---- 426
++LR + GF KP+ IQ +I P + RD+I A++G+GKT F I I+Q I+
Sbjct: 140 DILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKR 199
Query: 427 ----------SIRECQ-----ALILAPTRELAQQIQ 489
S E Q ALI+APTRELA Q++
Sbjct: 200 KAEQSPSDKESDLESQGYPLLALIMAPTRELALQVK 235
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALIL 456
F+ P+ IQ +++ + GRD+I A++G+GKT +S+ + + T ALIL
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 457 APTRELAQQI 486
PTREL QQ+
Sbjct: 152 TPTRELMQQV 161
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 516 LNAKCHACIGGTNVREDIRQLETGVHV 596
++ KCHACIGGTNVRED +LE GVHV
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGVHV 27
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 346 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAL 507
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + AL
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEAL 55
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 48.4 bits (110), Expect = 4e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+++ +CHACIGGTN+ EDIR+L+ G H+
Sbjct: 28 DYMSVQCHACIGGTNIGEDIRKLDYGQHI 56
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +1
Query: 430 IRECQALILAPTRELAQQIQKVVIAL 507
+RE QAL+L+PTRELA QIQKVV+AL
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLAL 26
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQI 420
E LL + G++KP+ +Q+ AI P ++G RD++A AQ+G+GKTA F I IL +I
Sbjct: 884 EILLHNVGLAGYKKPTPVQKYAI-PIVKGKRDLMACAQTGSGKTAAFLIPILSRI 937
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 6/54 (11%)
Frame = +1
Query: 343 GRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQI 486
G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA+Q+
Sbjct: 110 GEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQV 163
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/75 (29%), Positives = 41/75 (54%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC 441
+L+ + G KP IQ++A+ + ++ ++++GTGK+ F +L + R
Sbjct: 170 KLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVF---LLPSVQDPGRGY 226
Query: 442 QALILAPTRELAQQI 486
+I+ PTRELA Q+
Sbjct: 227 GTIIVVPTRELASQM 241
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ------ 417
++++L+ + A +P+ IQ I I VI AQ+G+GKT + ++ +
Sbjct: 386 RDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVHRLREDEE 445
Query: 418 ---IDTSIRECQALILAPTRELAQQIQKVVIAL 507
I ++ +A I+ P RELA QI K +L
Sbjct: 446 RHGILARLKRPRACIVVPARELATQILKTAKSL 478
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 387
E L + ++KP+ +Q+ +I I GRDV+A AQ+G+GKT
Sbjct: 143 EAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGK 384
E L + + +G+ P+ IQ + + + GRDV+ A +G+GK
Sbjct: 205 ESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 429
G P+++Q+ ++GRDV A G+GK + + I+ QI S
Sbjct: 206 GVTVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
>SB_24825| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-29)
Length = 338
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 392 VAVFPVPDWA*AITSRPWMQGIIARCWIAEGFSKP-*AYMPLNNSSLGSCHRRFRQLDPS 216
+AVFP+P A + W+ G I +GFS A++ L +L + +R F+ + PS
Sbjct: 70 MAVFPMPLSASVLAKGDWLHG--ETLCILQGFSVHFLAFVSLQIMALTALNRYFKVMRPS 127
Query: 215 RCQ 207
+C+
Sbjct: 128 QCR 130
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 448 LILAPTRELAQQIQKVVIAL 507
L+L PTRELAQQ+Q+V ++
Sbjct: 136 LVLCPTRELAQQVQEVAYSV 155
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 501 SSCDHLNAKCHACIGGTNVRED 566
S CDH+ KCH +G T V+ D
Sbjct: 123 SICDHVTGKCHCGLGWTGVKCD 144
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 92 PRIESGL*MSEDWPEDSKNGPSKDQGSYDG-----PPGMDPGTLDTDWDQVVETFDD--M 250
P ++SGL D DS GP D G G PGMDPG +D+ D +++ D M
Sbjct: 231 PGLDSGLDPGIDPGMDSGMGPGMDSGMDPGLDSRLDPGMDPG-MDSGIDPGLDSGLDPGM 289
Query: 251 NP 256
NP
Sbjct: 290 NP 291
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +1
Query: 250 EPKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 429
E E+ + + GF A Q++A+M + G + +G GK+ + + S
Sbjct: 508 ETPPEVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHKRS 567
Query: 430 IRECQALILAPTRELAQ 480
C L+++P L +
Sbjct: 568 --PCLTLVISPLVSLME 582
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 390
+EKP+ IQ +AI + GRD+IA + T + A
Sbjct: 125 YEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPC-IQGRDVIAQAQS 372
++LR + GF KP+ IQ +I P + RD+I A++
Sbjct: 82 DILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 337 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
+ G DV+A + SGT K + F ++++ D+ R+
Sbjct: 245 VNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 594 HEHQSPVGEYLHGHWCHQCKHGI*HSSDH-KSYHHLLNLL 478
H HQ ++ H H H H H H +HH++N++
Sbjct: 263 HHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHIINII 302
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 295 EKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
+KP + A P + G D +I Q+ GKT SI QQ+DT RE Q
Sbjct: 1276 DKPPKVSSSA--PSLMGTDEIICQSLEHAGKTPPALSSISQQLDTR-REIQ 1323
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 295 EKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
+KP + A P + G D +I Q++ GKT SI QQ+DT RE Q
Sbjct: 1567 DKPPKVSFSA--PSLMGTDEIICQSREHAGKTPPALSSIPQQLDTG-REIQ 1614
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 119 SEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNPKKNC 268
+E+ E +K + D+G GPPG GT D VVE DD K C
Sbjct: 22 AEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPEC 74
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMN 253
+D N + D G+ D D GT+D D D V+ DD N
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDN 107
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 134 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMN 253
+D N + D G+ D D GT+D D D V+ DD N
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDN 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,262,387
Number of Sequences: 59808
Number of extensions: 496364
Number of successful extensions: 2202
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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