Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00642
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       58   7e-11
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 58.0 bits (134), Expect = 7e-11
 Identities = 33/101 (32%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
 Frame = +1

Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL-----QQIDTS 429
           +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++ I+     + +D  
Sbjct: 207 VLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLV 266

Query: 430 IR----ECQALILAPTRELAQQIQKVVIALVIT*MLNAMLA 540
           +     E Q +I++PTREL  QI + ++   +  +L  ++A
Sbjct: 267 VTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVA 307


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 368 SQELEKLLLSLYRFYNKSIQAFVNV 442
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 558 GHWCHQCKHGI*HSS 514
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 281 YMPLNNSSLGSCHRRFRQLD 222
           + PLN++    CH+ FR L+
Sbjct: 396 FQPLNSAVCALCHKVFRTLN 415


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 536 LHWWHQCP 559
           LH WH CP
Sbjct: 470 LHHWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,367
Number of Sequences: 438
Number of extensions: 4630
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)