Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00642
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 128 3e-30
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 128 4e-30
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 127 5e-30
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 126 1e-29
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 105 3e-23
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 89 3e-18
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 89 3e-18
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 87 6e-18
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 87 6e-18
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 86 1e-17
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 80 1e-15
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 80 1e-15
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 66 2e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 64 9e-11
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 63 2e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 62 2e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 2e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 62 2e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 60 1e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 1e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 4e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 58 4e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 58 4e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 58 4e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 58 4e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 55 3e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 55 3e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 54 5e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 7e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 54 7e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 54 7e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 1e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 3e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 52 4e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 50 2e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 50 2e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 2e-06
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 49 3e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 4e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 4e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 5e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 8e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 47 8e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 47 1e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 47 1e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 3e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 44 6e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 44 6e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 44 1e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 3e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 42 3e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 3e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 5e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 39 0.003
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.005
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.007
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 32 0.25
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR... 31 0.44
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR... 31 0.44
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 29 3.1
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 28 5.4
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 28 5.4
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 5.4
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 27 7.2
At1g76010.1 68414.m08825 expressed protein 27 7.2
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 27 9.5
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 128 bits (309), Expect = 3e-30
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTATF +LQQ+D S+
Sbjct: 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLI 106
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
+CQAL+LAPTRELAQQI+KV+ AL
Sbjct: 107 QCQALVLAPTRELAQQIEKVMRAL 130
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+L K HAC+GGT+VRED R L+ GVHV
Sbjct: 132 DYLGVKVHACVGGTSVREDQRILQAGVHV 160
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 128 bits (308), Expect = 4e-30
Identities = 62/86 (72%), Positives = 73/86 (84%)
Frame = +1
Query: 250 EPKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 429
E + +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTATF +LQQ+D S
Sbjct: 47 ELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS 106
Query: 430 IRECQALILAPTRELAQQIQKVVIAL 507
+ +CQAL+LAPTRELAQQI+KV+ AL
Sbjct: 107 LVQCQALVLAPTRELAQQIEKVMRAL 132
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+L K AC+GGT+VRED R L++GVHV
Sbjct: 134 DYLGVKAQACVGGTSVREDQRVLQSGVHV 162
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 127 bits (307), Expect = 5e-30
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTATF +LQQ+D ++
Sbjct: 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALL 106
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
+CQAL+LAPTRELAQQI+KV+ AL
Sbjct: 107 QCQALVLAPTRELAQQIEKVMRAL 130
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 510 DHLNAKCHACIGGTNVREDIRQLETGVHV 596
D+ K HAC+GGT+VRED R L+ GVHV
Sbjct: 132 DYQGVKVHACVGGTSVREDQRILQAGVHV 160
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 126 bits (304), Expect = 1e-29
Identities = 58/84 (69%), Positives = 72/84 (85%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+ ++S+ Q +DTS R
Sbjct: 43 KEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSR 102
Query: 436 ECQALILAPTRELAQQIQKVVIAL 507
E QALIL+PTRELA Q +K + A+
Sbjct: 103 EVQALILSPTRELATQTEKTIQAI 126
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/28 (67%), Positives = 22/28 (78%)
Frame = +3
Query: 513 HLNAKCHACIGGTNVREDIRQLETGVHV 596
H N + HACIGG +V EDIR+LE GVHV
Sbjct: 129 HANIQAHACIGGNSVGEDIRKLEHGVHV 156
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 105 bits (251), Expect = 3e-23
Identities = 46/83 (55%), Positives = 68/83 (81%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
+++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+
Sbjct: 31 DKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRK 90
Query: 439 CQALILAPTRELAQQIQKVVIAL 507
Q L+L+P+RELA Q +K + A+
Sbjct: 91 VQVLVLSPSRELASQTEKTIQAI 113
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +3
Query: 513 HLNAKCHACIGGTNVREDIRQLETGVH 593
H N + HACIGG ++ EDI++LE GVH
Sbjct: 116 HTNIQAHACIGGKSIGEDIKKLERGVH 142
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++ID
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNN 198
Query: 436 ECQALILAPTRELAQQIQKV 495
QA+I+ PTRELA Q +V
Sbjct: 199 VIQAVIIVPTRELALQTSQV 218
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 88.6 bits (210), Expect = 3e-18
Identities = 42/80 (52%), Positives = 57/80 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++ID
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNN 198
Query: 436 ECQALILAPTRELAQQIQKV 495
QA+I+ PTRELA Q +V
Sbjct: 199 VIQAVIIVPTRELALQTSQV 218
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 87.4 bits (207), Expect = 6e-18
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++ID +
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNN 191
Query: 436 ECQALILAPTRELAQQIQKV 495
QA+IL PTRELA Q +V
Sbjct: 192 VIQAMILVPTRELALQTSQV 211
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 513 HLNAKCHACIGGTNVREDIRQLETGVHV 596
+LN + GGT++R+DI +L VH+
Sbjct: 218 YLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 87.4 bits (207), Expect = 6e-18
Identities = 41/80 (51%), Positives = 57/80 (71%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++ID +
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNN 191
Query: 436 ECQALILAPTRELAQQIQKV 495
QA+IL PTRELA Q +V
Sbjct: 192 VIQAMILVPTRELALQTSQV 211
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 513 HLNAKCHACIGGTNVREDIRQLETGVHV 596
+LN + GGT++R+DI +L VH+
Sbjct: 218 YLNIQVMVTTGGTSLRDDIMRLHQPVHL 245
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 86.2 bits (204), Expect = 1e-17
Identities = 42/80 (52%), Positives = 55/80 (68%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++ID
Sbjct: 162 KRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENN 221
Query: 436 ECQALILAPTRELAQQIQKV 495
QA+IL PTRELA Q +V
Sbjct: 222 VIQAVILVPTRELALQTSQV 241
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 79.8 bits (188), Expect = 1e-15
Identities = 43/77 (55%), Positives = 49/77 (63%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQI+ S
Sbjct: 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPG 113
Query: 436 ECQALILAPTRELAQQI 486
+ AL+L TRELA QI
Sbjct: 114 QVSALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 79.8 bits (188), Expect = 1e-15
Identities = 43/77 (55%), Positives = 49/77 (63%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
K ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQI+ S
Sbjct: 54 KPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPG 113
Query: 436 ECQALILAPTRELAQQI 486
+ AL+L TRELA QI
Sbjct: 114 QVSALVLCHTRELAYQI 130
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Frame = +1
Query: 262 ELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSISILQQIDTS 429
EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F + +L ++D +
Sbjct: 101 ELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPT 159
Query: 430 IRECQALILAPTRELAQQIQKVV 498
+RE QAL + PTRELA Q +V+
Sbjct: 160 LREPQALCICPTRELANQNMEVL 182
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 63.7 bits (148), Expect = 9e-11
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------D 423
E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 126 EIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKH 185
Query: 424 TSIRECQALILAPTRELAQQIQK 492
+ Q L+LAPTRELA+Q++K
Sbjct: 186 GRGKNPQCLVLAPTRELARQVEK 208
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 6/88 (6%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIR 435
L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT + + +LQ++ D+ +
Sbjct: 57 LIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSK 116
Query: 436 E---CQALILAPTRELAQQIQKVVIALV 510
+ A IL P+REL QQ+ V +L+
Sbjct: 117 KKLAPSAFILVPSRELCQQVYTEVSSLI 144
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 439 CQALILAPTRELAQQIQKV 495
QA+I+ PTREL Q+ KV
Sbjct: 145 VQAVIVVPTRELGMQVTKV 163
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.5 bits (145), Expect = 2e-10
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 6/83 (7%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------D 423
E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 114 EIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKH 173
Query: 424 TSIRECQALILAPTRELAQQIQK 492
R L+LAPTRELA+Q++K
Sbjct: 174 GRGRNPLCLVLAPTRELARQVEK 196
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 62.5 bits (145), Expect = 2e-10
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------- 420
ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +L I
Sbjct: 323 ELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMS 382
Query: 421 -DTSIRECQALILAPTRELAQQIQKVVI 501
+ A+++APTRELAQQI++ +
Sbjct: 383 EENETEGPYAVVMAPTRELAQQIEEETV 410
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 10/73 (13%)
Frame = +1
Query: 310 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILA 459
IQ+ ++P +QGRD+IA+A++GTGKT F I I++++ T+ R + L+LA
Sbjct: 128 IQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLA 187
Query: 460 PTRELAQQIQKVV 498
PTRELA+Q++K +
Sbjct: 188 PTRELAKQVEKEI 200
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIR 435
LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L+++ +
Sbjct: 178 LLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVF 237
Query: 436 ECQALILAPTRELAQQIQKVV 498
+ LIL PTRELA QI ++
Sbjct: 238 ATRVLILTPTRELAVQIHSMI 258
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTR 468
G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTR
Sbjct: 77 GMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTR 136
Query: 469 ELAQQIQKVVIAL 507
ELA Q+ + AL
Sbjct: 137 ELAFQLAEQFKAL 149
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.0 bits (134), Expect = 4e-09
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 12/96 (12%)
Frame = +1
Query: 256 KEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIR 435
+EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+I ILQ + +
Sbjct: 17 REELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVY 76
Query: 436 ECQ------------ALILAPTRELAQQIQKVVIAL 507
+ + A +L+PTRELA QI + AL
Sbjct: 77 DSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEAL 112
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 4e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSI 432
ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I LQ+I
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDS 227
Query: 433 RECQA-LILAPTRELAQQIQKVVI 501
R L+L+PTRELA QIQ+ +
Sbjct: 228 RMGPTILVLSPTRELATQIQEEAV 251
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 4e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSI 432
ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I LQ+I
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDS 227
Query: 433 RECQA-LILAPTRELAQQIQKVVI 501
R L+L+PTRELA QIQ+ +
Sbjct: 228 RMGPTILVLSPTRELATQIQEEAV 251
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 58.0 bits (134), Expect = 4e-09
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSI 432
ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I LQ+I
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDS 227
Query: 433 RECQA-LILAPTRELAQQIQKVVI 501
R L+L+PTRELA QIQ+ +
Sbjct: 228 RMGPTILVLSPTRELATQIQEEAV 251
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAP 462
G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L+++ + + +ALIL+P
Sbjct: 47 GYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSP 106
Query: 463 TRELAQQIQK 492
TR+LA+Q K
Sbjct: 107 TRDLAEQTLK 116
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
+ +L I GF +P+ IQ + ++GRD+I A++G+GKT + + L + R
Sbjct: 174 DNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRL 233
Query: 439 CQ-----ALILAPTRELAQQIQK 492
Q LILAPTRELA QIQ+
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 438
+ +L I GF +P+ IQ + ++GRD+I A++G+GKT + + L + R
Sbjct: 174 DNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRL 233
Query: 439 CQ-----ALILAPTRELAQQIQK 492
Q LILAPTRELA QIQ+
Sbjct: 234 GQDDGPIVLILAPTRELAVQIQE 256
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 54.4 bits (125), Expect = 5e-08
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +1
Query: 349 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 486
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 54.0 bits (124), Expect = 7e-08
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +1
Query: 271 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI---SILQQIDTSIREC 441
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 442 QA-LILAPTRELAQQIQ 489
L+L+PTRELA QIQ
Sbjct: 302 PTILVLSPTRELATQIQ 318
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 54.0 bits (124), Expect = 7e-08
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSI 432
E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I +L+
Sbjct: 445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDS 504
Query: 433 RE-CQALILAPTRELAQQIQ 489
R LILAPTRELA QIQ
Sbjct: 505 RNGPTVLILAPTRELATQIQ 524
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.0 bits (124), Expect = 7e-08
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIR 435
+++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA F + ++ I ++
Sbjct: 238 QIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 297
Query: 436 ECQ---ALILAPTRELAQQI 486
+ +I APTRELA QI
Sbjct: 298 RDEGPIGVICAPTRELAHQI 317
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 8/84 (9%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT----- 426
+LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I+ + T
Sbjct: 120 KLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEH 179
Query: 427 ---SIRECQALILAPTRELAQQIQ 489
R A++LAPTREL Q++
Sbjct: 180 PSDQRRNPLAMVLAPTRELCVQVE 203
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 441
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 442 QALILAPTRELAQQ 483
+A+IL+P RELA Q
Sbjct: 212 RAVILSPARELAAQ 225
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 51.6 bits (118), Expect = 4e-07
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 10/75 (13%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ------- 444
+ KP+ +Q+ AI ++GRD++A AQ+G+GKTA F I+ I D ++ +
Sbjct: 179 YVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 238
Query: 445 -ALILAPTRELAQQI 486
A+IL+PTRELA QI
Sbjct: 239 LAVILSPTRELASQI 253
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRE 438
++L + +EKP IQ +A+ + GRD I A++G+GKT F + +L+ I D E
Sbjct: 406 KILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVE 465
Query: 439 CQ----ALILAPTRELAQQI 486
L++APTREL QQI
Sbjct: 466 AGDGPIGLVMAPTRELVQQI 485
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Frame = +1
Query: 247 HEPKEEL-LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 420
H P L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++ +
Sbjct: 58 HYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVV 117
Query: 421 -------DTSIRECQALILAPTRELAQQ 483
D AL++ PTRELA Q
Sbjct: 118 KSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Frame = +1
Query: 268 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------D 423
L+ I GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D
Sbjct: 394 LKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRD 453
Query: 424 TSIRECQALILAPTRELAQQ 483
+ L++ PTRELA Q
Sbjct: 454 SRQPPIIVLVVCPTRELASQ 473
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------ 420
E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++Q++
Sbjct: 383 EDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQ 442
Query: 421 --DTSIREC-QALILAPTRELAQQI 486
S C + ++L PT ELA Q+
Sbjct: 443 GHSKSSPGCPRVIVLVPTAELASQV 467
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 450
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 451 ILAPTRELAQQIQKVVIALV 510
++ PTREL Q+ + + L+
Sbjct: 109 VIVPTRELCLQVYETLEKLL 128
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALIL 456
+EKP IQ +A+ + GRD I A++G+GKT F + +L+ I D E L++
Sbjct: 549 YEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
Query: 457 APTRELAQQI 486
APTREL QQI
Sbjct: 609 APTRELVQQI 618
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------ 420
+ LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL +I
Sbjct: 119 DSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEK 178
Query: 421 -------DTSIRECQALILAPTRELAQQIQKVVIALV 510
+ E QA+I+AP+REL QI + V L+
Sbjct: 179 SRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Frame = +1
Query: 271 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE- 438
+ I GF + + IQ +AI P + G DV+ A++G+GKT F ++ +L ++ + R
Sbjct: 167 KSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNG 226
Query: 439 CQALILAPTRELAQQ 483
L++ PTRELA Q
Sbjct: 227 TGVLVICPTRELAIQ 241
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ 444
+L + GF +P+ IQ + ++GRD+I A++G+GKT ++ + + ++
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 445 -----ALILAPTRELAQQIQK 492
L+LAPTRELA QIQ+
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQ 190
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 48.4 bits (110), Expect = 4e-06
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSI 432
E L I + KP+ +Q+ AI GRD++A AQ+G+GKTA F I+ I D I
Sbjct: 155 EALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHI 214
Query: 433 RECQ--------ALILAPTRELAQQI 486
+ A+IL+PTRELA QI
Sbjct: 215 ERPRGVRGVYPLAVILSPTRELACQI 240
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Frame = +1
Query: 268 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----SILQQIDT--- 426
L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++L+ +++
Sbjct: 340 LKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 399
Query: 427 --SIRECQALILAPTRELAQQI 486
+ ALIL PTRELA QI
Sbjct: 400 VNKVAPIFALILCPTRELASQI 421
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Frame = +1
Query: 268 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------D 423
L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++ + D
Sbjct: 92 LKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRD 151
Query: 424 TSIRECQALILAPTRELAQQ 483
L++ PTRELA Q
Sbjct: 152 NRHPPIIVLVVCPTRELACQ 171
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 8e-06
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SISILQQIDTS 429
E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++ +L + S
Sbjct: 98 EQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFS 157
Query: 430 IRE-CQALILAPTRELAQQIQKVVIALV 510
R +++ PTRELA Q + V L+
Sbjct: 158 PRNGTGVIVICPTRELAIQTKNVAEELL 185
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.2 bits (107), Expect = 8e-06
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Frame = +1
Query: 268 LRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----SILQQIDT--- 426
L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++L+ +++
Sbjct: 387 LKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKG 446
Query: 427 --SIRECQALILAPTRELAQQI 486
+ LIL PTRELA QI
Sbjct: 447 VHKVAPIFVLILCPTRELASQI 468
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAI-MPCIQGRDVIAQAQSGTGKTATFSISILQQI 420
L++ IY F++P+ IQ+ + QG+DVI A++G+GKT F + ILQ++
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------Q 444
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 445 ALILAPTRELAQQIQKVV 498
L+L+PTRELA QI V+
Sbjct: 194 CLVLSPTRELAVQISDVL 211
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS--- 429
E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 25 EDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 84
Query: 430 ---IRECQALILAPTRELAQQIQKVVIALVIT 516
+ +I++PTREL+ QI KV V T
Sbjct: 85 PPKPHQVMGVIISPTRELSAQIHKVAEPFVST 116
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS--- 429
E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 26 EDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSY 85
Query: 430 ---IRECQALILAPTRELAQQIQKVVIAL 507
+ +I++PTREL+ QI KV A+
Sbjct: 86 PPKPHQVMGVIISPTRELSAQIHKVARAV 114
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.4 bits (100), Expect = 6e-05
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ------- 444
+ +P+ +Q+ AI + RD++A AQ+G+GKTA F I+ I D + +
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230
Query: 445 -ALILAPTRELAQQI 486
A+IL+PTRELA QI
Sbjct: 231 FAVILSPTRELACQI 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 44.4 bits (100), Expect = 6e-05
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Frame = +1
Query: 292 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ------- 444
+ +P+ +Q+ AI + RD++A AQ+G+GKTA F I+ I D + +
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230
Query: 445 -ALILAPTRELAQQI 486
A+IL+PTRELA QI
Sbjct: 231 FAVILSPTRELACQI 245
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +1
Query: 271 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-- 444
RG+ + + +Q AI + GRD++ A++G+GKT F I IL+++ +
Sbjct: 84 RGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDG 143
Query: 445 --ALILAPTRELAQQ 483
+I++PTRELA Q
Sbjct: 144 VGCIIISPTRELAAQ 158
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Frame = +1
Query: 265 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL-----QQIDTS 429
LLR + G P+ IQ + + + GRD+I A +G+GKT F + ++ ++I
Sbjct: 108 LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMP 167
Query: 430 IRECQ---ALILAPTRELAQQIQKVV 498
I + AL++ P+RELA+Q VV
Sbjct: 168 IAAGEGPIALVICPSRELAKQTYDVV 193
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 307 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 483
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 484 IQKVVIAL 507
++ V A+
Sbjct: 110 VKDVFDAI 117
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Frame = +1
Query: 319 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 474
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 475 AQQIQ 489
Q++
Sbjct: 62 CVQVE 66
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Frame = +1
Query: 259 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI------ 420
EE++ + E P+ IQ I ++ + V+ + +G+GKT + + I+Q +
Sbjct: 121 EEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEAN 180
Query: 421 ---DTSIRECQALILAPTRELAQQIQKV 495
T R + ++L PTREL++Q+ +V
Sbjct: 181 LGKKTKPRRPRTVVLCPTRELSEQVYRV 208
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-------- 444
GF++PS Q I + G+DVI A++G+GKT + I+ Q+ + + +
Sbjct: 99 GFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERP 158
Query: 445 ------ALILAPTRELAQQIQKVVIALV 510
+LIL P L +Q+ ++V LV
Sbjct: 159 FPLKNISLILCPNVMLCEQVVRMVNGLV 186
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 289 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ--- 444
G +P+ IQ + + + GRD+I A +G+GKT F I++ +++ I +
Sbjct: 165 GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI 224
Query: 445 ALILAPTRELAQQIQKVV 498
LI+ P+RELA+Q +VV
Sbjct: 225 GLIVCPSRELARQTYEVV 242
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 283 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI---------- 432
A G E IQ + G D++ +A++G GKT F + IL+ +
Sbjct: 113 ANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYG 172
Query: 433 RECQALILAPTRELAQQI 486
R L+L PTRELA+Q+
Sbjct: 173 RSPSVLVLLPTRELAKQV 190
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +1
Query: 262 ELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI--- 432
+++ + FE + +Q I +DV A +G+GKT F + +++ + S
Sbjct: 26 DIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFP 85
Query: 433 ---RECQALILAPTRELAQQIQKVVIALVIT 516
+ +I++PTREL+ QI V V T
Sbjct: 86 PKPHQVMGVIISPTRELSTQIYNVAQPFVST 116
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 405 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSSCDHLNAKCHACIGG 548
+ T NR+ + M + GS R GP + G SS L C+ C G
Sbjct: 107 NKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYCCAEG 154
>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1404
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 340 GCKALLRV-AGLQKVFQNHRRICLSTILLWVHVIEGFDNLIPVGVKCPRVHSRRSIV 173
GC++L+ + + +Q + + C IL+ + +EG NL + V C RV + IV
Sbjct: 651 GCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYLSVDCSRVEGTQGIV 707
>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1449
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 340 GCKALLRV-AGLQKVFQNHRRICLSTILLWVHVIEGFDNLIPVGVKCPRVHSRRSIV 173
GC++L+ + + +Q + + C IL+ + +EG NL + V C RV + IV
Sbjct: 651 GCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYLSVDCSRVEGTQGIV 707
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +1
Query: 286 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 465
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 466 RELAQQIQKVVIALVIT 516
L Q + AL I+
Sbjct: 139 LSLIQDQVMGLAALGIS 155
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = -2
Query: 354 NIASLDARHYCALLDCRRFFKTIGVYASQ 268
NI+ ++ + C+L+DC++ + + +A+Q
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQ 401
>At1g75640.1 68414.m08788 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1140
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 220 PVGVKCPRVHSRRSIVTTLILRWPIFGILWPIF*HL*TTFNSWGGRHKCNI 68
P+G++CP V RR L++ + G L + F+ W R+K +
Sbjct: 738 PLGIECPNVRRRRRRKLILLVTLAVAGALLLLLCCCGYVFSLWKWRNKLRL 788
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 411 TTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSSCDHLNAKCHACIGG 548
T NRY + M + GS R GP + +G L C+ C+ G
Sbjct: 153 TFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRA-MLGIPCYCCVEG 197
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 168 P*SFD-GPFLESSGQSSDIYKPLSIL 94
P +FD GP++ G+ SD+YK +++
Sbjct: 401 PETFDLGPYMSGGGEGSDVYKLYAVI 426
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 146 NGPSKDQGSYDGPPGMDPG 202
+GPS+ +G YDGP G G
Sbjct: 299 DGPSQGRGGYDGPQGRGRG 317
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 411 TTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSSCDHLNAKCHACIGG 548
T NRY + M + GS R GP + G + L C+ C G
Sbjct: 264 TFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTA-MLKLPCYCCAPG 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,391
Number of Sequences: 28952
Number of extensions: 340946
Number of successful extensions: 1081
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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