Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00641
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   1.7  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   3.0  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   4.0  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.9  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.1  

>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 287 VNSLSLFVTWRALTVRLPVFILKSEATTCP-LCPSVLLLTHLCKTV*KILST*LDVRERS 463
           V  L+ FV  R  T R  + +LK    TCP L     ++  L +T  +IL+T  D+ E +
Sbjct: 235 VEELTPFVRDRRATYRQSLSVLKHVKKTCPHLITKTSIMLGLGETDAEILTTLKDLLEHN 294


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 318 LQVTNKLSELTMPSRELLKPWFMSHFYLHNHGEDYLHHFQHLITSCFFSFIEFGSII 148
           L+    L+ L+ P  + L+P   S   LHN     L   ++   S +   IE+G I+
Sbjct: 467 LKFQTALNNLSTPKGKSLRP---SKLMLHNQDSSILFQTENAPHSLYHMDIEYGKIV 520


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 313 LESIDGEVARLHTQIRSHYLPPVSISSSVDTSL*NSIKDII 435
           LE + G+++   T +  +YL  +++  +V+    + IKDI+
Sbjct: 715 LEQLWGDMSDFSTHLSFYYLCSINLMENVEEESIDKIKDIL 755


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 427 LLYCFTKMCQQKN*WTQ 377
           L+ C T MC+Q+  WT+
Sbjct: 51  LILCLTIMCEQRRSWTE 67


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 306 NKLSELTMPSRELLKPWFMSHFY--LHNHGEDYLHHFQHLITSC 181
           ++L+ LT  +R  + P    H +  L    ED+L+H Q   T C
Sbjct: 289 SRLTVLTFSNRAFIFP---DHTFPRLQQSAEDFLYHLQFFFTLC 329


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -2

Query: 342 TGNLTVNALQVTNKLSELTM-PSRELLKPWFMSHFYLHNHGEDYLHHFQHLITSCF-FSF 169
           TGN T+  L++  +LSEL    S   L+P       + N+      H + ++ S F  S 
Sbjct: 438 TGNQTMKCLEIHQELSELIRNSSTNYLEP---VEVRMQNYSG--TKHTRKVVESGFDKSI 492

Query: 168 IEFGSIIRRFQGAI 127
           I+F  I+++  G +
Sbjct: 493 IDFSKILKKIVGLL 506


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 512 VF*RTLRFAIFHNLLFGIFP 453
           +F + L FAIF+N LF I P
Sbjct: 585 MFHKELYFAIFNNFLFAIQP 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,153
Number of Sequences: 5004
Number of extensions: 41307
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)