Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00641
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709...    31   0.75 
11_06_0094 - 20007535-20007658,20007759-20008367,20009021-200090...    30   1.3  
01_03_0202 - 13762042-13762572                                         27   9.2  

>06_01_0919 -
           7090494-7091219,7091630-7091763,7091860-7091927,
           7092471-7092515,7092620-7092639,7092798-7092860,
           7092946-7093115,7093216-7093252
          Length = 420

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 293 SLSLFVTWRALTVRLP-VFILKSEATTCPLCPSVLLLTHLCKTV*KILST 439
           ++  F T R+  + LP +F+ K + T C +C S L   + C     +++T
Sbjct: 364 TMGTFPTSRSFLLNLPLIFVCKEKDTECSICKSTLATKYRCHVHASLVNT 413


>11_06_0094 -
           20007535-20007658,20007759-20008367,20009021-20009094,
           20009187-20009837
          Length = 485

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 309 TNKLSELTMPSRELLKPWFMSHFYLHNHGEDYLHHFQHL 193
           T  + +L + SRE + P+ M  F   +H    LHH QHL
Sbjct: 94  TGHIVKLNLGSRESINPFAMRLFGEISHSLLSLHHLQHL 132


>01_03_0202 - 13762042-13762572
          Length = 176

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 385 WTQGAGSGFGFEYEDGQP 332
           W +G+GSG G+E   G+P
Sbjct: 104 WNRGSGSGAGWEDSSGEP 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,817
Number of Sequences: 37544
Number of extensions: 261938
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)