Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00641
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   1.8  
SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)                  28   5.4  
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)                    28   5.4  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)                 27   9.5  
SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 27   9.5  

>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 333 GCPSSYSNPKPLPAPCV 383
           GCPS+ S P P PAP V
Sbjct: 703 GCPSTTSTPAPAPAPAV 719


>SB_7694| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-28)
          Length = 329

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 284 IVNSLSLFVTWRALTVRLPVFILKSEATTCPLCPSVL 394
           ++N+L L   W+  T+  P  IL S      LC  +L
Sbjct: 41  LLNALVLAAIWKTATLHTPAMILLSNLALSDLCVGLL 77


>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
          Length = 815

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 282 PSREL--LKPWFMSHFYLH-NHGEDYLHHFQH 196
           P+R L  L  +++ H +LH NH  D+ HH  H
Sbjct: 375 PNRYLHHLHDYYLHHHHLHHNHKNDHKHHHLH 406


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 456 KDPKKQIVKYRESQCTLKD 512
           K  K+QIV Y+++ CTL D
Sbjct: 42  KTQKRQIVSYKKNDCTLSD 60


>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
          Length = 540

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 302 LFVTWRALTVRLPVFILKSEATTCPLC-PSVLLLTHLCKTV 421
           + +T   +T  +P F++   AT CP C P V  + HL + V
Sbjct: 225 IVITGLFVTAWMPFFVVTVIATLCPSCLPPVPQVYHLVRFV 265


>SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 641

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 345 SYSNPKPLPAPCVHQFFC*HIFVKQYKRYYQPN*ML-GKDPKKQIVK 482
           S SNP+P+P+P   Q     I VK    Y+Q    L G+D KK I K
Sbjct: 527 SLSNPQPVPSPTNRQ----KIRVKFEPPYFQEKVRLQGQDWKKHIEK 569


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,303
Number of Sequences: 59808
Number of extensions: 304009
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)