Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00641
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical p...    29   2.0  
U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical p...    29   2.0  
U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical
           protein R05F9.1c protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 20  SCFN*ILDDAAMIRN*NMSSPQSVSVDQMRQILNEIIAPWN 142
           SCF  ILD     ++  M  P SVSV ++R+  + ++ P+N
Sbjct: 92  SCFRAILD---YYQSGTMRCPSSVSVSELREACDYLLVPFN 129


>U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical
           protein R05F9.1a protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 20  SCFN*ILDDAAMIRN*NMSSPQSVSVDQMRQILNEIIAPWN 142
           SCF  ILD     ++  M  P SVSV ++R+  + ++ P+N
Sbjct: 196 SCFRAILD---YYQSGTMRCPSSVSVSELREACDYLLVPFN 233


>U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical
           protein R05F9.1b protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 20  SCFN*ILDDAAMIRN*NMSSPQSVSVDQMRQILNEIIAPWN 142
           SCF  ILD     ++  M  P SVSV ++R+  + ++ P+N
Sbjct: 293 SCFRAILD---YYQSGTMRCPSSVSVSELREACDYLLVPFN 330


>Z70783-1|CAA94852.2|  765|Caenorhabditis elegans Hypothetical
           protein ZK856.1 protein.
          Length = 765

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -2

Query: 381 HRGQVVASDLSMKTGNLTVNALQVTNKLSELTMPSRELLKPWFMSHFYLHNHGEDYL 211
           H   V   +L ++ G + +   + T  L++LTM   E+LKP F+ +  +     D+L
Sbjct: 689 HESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQIDWL 745


>Z81589-3|CAB04719.1|  256|Caenorhabditis elegans Hypothetical
           protein T08G5.7 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 317 RALTVRLPVFILKSEATTCPLCPS 388
           R L V L +FI+ S  T CP CP+
Sbjct: 9   RQLFVILKLFIIMSFMTKCPKCPT 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,569
Number of Sequences: 27780
Number of extensions: 235249
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)