Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00641
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.27 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 192 ITSCFFSFIEFGSIIRRFQGAIISFSIC 109
           +TSC F ++   + IR F   I +FS C
Sbjct: 194 LTSCSFDYLTDTNEIRIFVATIFTFSYC 221


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 357 DLSMKTGNLTVNALQVTNK 301
           D+S++ G L++N +Q TN+
Sbjct: 732 DISVEDGTLSINNIQKTNE 750


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 300 LSELTMPSRELLKPWFMSHFYLHNH 226
           L +L+ P      P + SH +LH+H
Sbjct: 55  LMDLSSPPEHRDLPIYQSHHHLHHH 79


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 339 PSSYSNPKPLPAPCV 383
           P    N KPLP  CV
Sbjct: 27  PRRKKNKKPLPTECV 41


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 237 LHNHGEDYLHHFQHLITSCFFSFIEFGSII 148
           LH H   +     H  T C  +FI+ G ++
Sbjct: 163 LHRHMRIHTGERPHKCTVCSKTFIQSGQLV 192


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 339 GNLTVNALQVTNKLSE-LTMPSR 274
           GN+T+N    +NK++  LT P R
Sbjct: 112 GNITLNIESTSNKMTVILTPPGR 134


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 303 KLSELTMPSRELLKPWFMSHFYLHNHGEDYLHHFQHLITSCFFS 172
           +LS     SREL+K   +++ ++ N     +   + L  SC FS
Sbjct: 81  QLSNKRDRSRELIKAAILANDFMKNLELTQIRRDRGLHVSCSFS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,543
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)