Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7Q9Y8 Cluster: ENSANGP00000011734; n=4; Endopterygota|...    54   2e-06
UniRef50_Q95RC5 Cluster: LD44506p; n=4; Eukaryota|Rep: LD44506p ...    39   0.11 
UniRef50_Q6UUN2 Cluster: Putative transposon protein; n=1; Oryza...    34   3.1  
UniRef50_A2R4L3 Cluster: Similarity to hypothetical zinc-finger ...    33   5.5  
UniRef50_P51838 Cluster: DNA repair protein recO; n=3; Coxiella ...    33   5.5  

>UniRef50_Q7Q9Y8 Cluster: ENSANGP00000011734; n=4;
           Endopterygota|Rep: ENSANGP00000011734 - Anopheles
           gambiae str. PEST
          Length = 490

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 25/37 (67%), Positives = 31/37 (83%), Gaps = 2/37 (5%)
 Frame = +2

Query: 254 WDLGDDE--IISGIADTKISKSISETAALNVINSHRN 358
           WDLGDDE  IISG+ DT+ISK  S+TAALNVI +H++
Sbjct: 54  WDLGDDEFCIISGVVDTRISKRASQTAALNVIKTHKS 90



 Score = 34.7 bits (76), Expect = 1.8
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
 Frame = +3

Query: 123 GLLSDTFWRTPQRAVPGRPYQRVIPNEVMSG-----------SSYQQFQASVNDA 254
           G  S +FWR   R +PGRP    + N + SG           SS+Q +Q SV+DA
Sbjct: 1   GTTSSSFWRNNSRTIPGRP--TTVTNRIGSGRTIGAGSSGGSSSFQDYQDSVSDA 53


>UniRef50_Q95RC5 Cluster: LD44506p; n=4; Eukaryota|Rep: LD44506p -
           Drosophila melanogaster (Fruit fly)
          Length = 546

 Score = 38.7 bits (86), Expect = 0.11
 Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
 Frame = +2

Query: 158 ARCTGEALPKGH-PKRGYVRVVVSAIPGVSQRRWDLGDDE--IIS---------GIAD-T 298
           A   G A+ +G  P  G V         VS   WD+GDDE  IIS         G  D  
Sbjct: 73  AAAVGVAVGRGAAPGSGMVSTFTEYQKSVSDA-WDMGDDEFCIISSTEAAAAAVGAGDAA 131

Query: 299 KISKSISETAALNVINSHRNSTKNVNRS 382
             S+ +S+T ALNVI +H  S +N N S
Sbjct: 132 HFSRQVSQTVALNVIETHSRSNQNHNAS 159


>UniRef50_Q6UUN2 Cluster: Putative transposon protein; n=1; Oryza
           sativa (japonica cultivar-group)|Rep: Putative
           transposon protein - Oryza sativa subsp. japonica (Rice)
          Length = 379

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 88  LLWKITNPNMTRVCCLTRSGGHLSALYRGGLTKGSSQTRLCPGRRISNSRRQSTTLG 258
           LL+    P  +R+CCL R+   ++  + G  T  SS     P ++++ S   ST+ G
Sbjct: 114 LLFPRCRPPSSRLCCLARAAADVAIAFPGTATPSSSPASPYPRQKLAGSVSSSTSGG 170


>UniRef50_A2R4L3 Cluster: Similarity to hypothetical zinc-finger
           protein CAC28841.2 - Neurospora crassa; n=1; Aspergillus
           niger|Rep: Similarity to hypothetical zinc-finger
           protein CAC28841.2 - Neurospora crassa - Aspergillus
           niger
          Length = 531

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -1

Query: 516 ERCSRTGRGRPGYCLIPDPPPT 451
           +RCS TGR   GY LIP  PPT
Sbjct: 52  QRCSSTGRRCDGYNLIPQKPPT 73


>UniRef50_P51838 Cluster: DNA repair protein recO; n=3; Coxiella
           burnetii|Rep: DNA repair protein recO - Coxiella
           burnetii
          Length = 231

 Score = 33.1 bits (72), Expect = 5.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 76  SNCTLLWKITNPNMTRVCCLTRSGGHLSALYRGGL 180
           SN +L+ ++  PN  RVC L RS   L + Y+G L
Sbjct: 19  SNTSLILELLTPNHGRVCALARSARGLKSRYKGKL 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,586,749
Number of Sequences: 1657284
Number of extensions: 9789767
Number of successful extensions: 29328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29319
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)