Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   2.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   3.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   4.7  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 12  HINKKTFYVVLLLYVKHS*ECFKLYVIM 95
           H N+    +VL+ + + S  CF  YVI+
Sbjct: 57  HRNEIHIKIVLMFFKEASLYCFNYYVIV 84


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 217 RRISNSRRQSTTLGSRRRRDHLGDS 291
           +R+S++RR +  +  +RRR  + +S
Sbjct: 29  KRVSDNRRSNKPIMEKRRRARINNS 53


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 215 PGHNLVWDDPLVRPPRYSAL 156
           P H ++W  PL   P +  L
Sbjct: 413 PEHVIMWSSPLTESPYFEKL 432


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
 Frame = +1

Query: 22  KKLFMW-FCYCT*NIVKNVSNCTLLWKITNPNMTRVCCLTRSGGHLSALYRGGLTKGSSQ 198
           KK F + F Y   NIV  +   T      N   +  C LT S       Y   +  GS  
Sbjct: 184 KKQFHYIFTYMPYNIVFGLCLTTFGLLPVNGVTSEKCNLTFSWYSKKVFYSKIIISGSIF 243

Query: 199 TRLCPGRRISNSRRQSTTLGS 261
                  RI NS    TT GS
Sbjct: 244 MTTTSFYRILNSGYNLTTFGS 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,392
Number of Sequences: 336
Number of extensions: 2326
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)