Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   6.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    25   8.8  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 506 LQRSLHARRAVSLNWSASSRYTIAQSSTSTNSN 604
           LQ+ L  R+   + WS+SSR  +A+S    + N
Sbjct: 199 LQKDLIFRQNKPVYWSSSSRSALAESEIEYDDN 231


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 545 NWSASSRYTIAQSSTSTNSNRSA 613
           NW++SS +T + SST  +S+ S+
Sbjct: 204 NWNSSSSFTSSTSSTPISSSYSS 226


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 137 HVLEDTSARCTGEALPKGHPKRGYV--RVVVSAIPGVSQRRWDLGDDEIISGIADTKISK 310
           H++ DT        L +   +  Y   RV+       S++ ++L  D++I  +   +  K
Sbjct: 7   HLVLDTGGIICSSTLLRNSAESFYTIPRVIAEIRDETSRKNFELWGDQVIQRVPKPEFIK 66

Query: 311 SISETA 328
            +SE A
Sbjct: 67  KVSEFA 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,190,357
Number of Sequences: 5004
Number of extensions: 39264
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)