Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    31   0.73 
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740...    29   3.0  
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    27   9.0  
03_04_0040 - 16730622-16730873,16731005-16731340                       27   9.0  
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530...    27   9.0  

>09_06_0055 - 20550889-20551531,20551612-20551889,20552035-20552203,
            20552397-20552534,20553945-20553997,20554521-20554574,
            20556062-20556295,20556399-20556986,20557065-20557419,
            20557494-20557694,20557925-20557998,20558114-20558254,
            20558611-20558670,20558750-20558806,20559281-20559318,
            20559419-20559578
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 25/65 (38%), Positives = 34/65 (52%)
 Frame = +2

Query: 140  VLEDTSARCTGEALPKGHPKRGYVRVVVSAIPGVSQRRWDLGDDEIISGIADTKISKSIS 319
            +LE  SAR   E LP G  KR    +V  A P V +RRW+   D  ++G  D    +++ 
Sbjct: 947  LLELVSARRPLEKLPGG-VKR---EIVQWAAPLVERRRWERLADPRLAGRFDAAQLRAVV 1002

Query: 320  ETAAL 334
            ETA L
Sbjct: 1003 ETAML 1007


>04_04_1060 -
           30473509-30473619,30473815-30473850,30474063-30474095,
           30474246-30474335,30474466-30475215
          Length = 339

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 473 RQYPGRPRPVRLQRSLHARRAVSLNWSASSRYTIAQSSTSTNSNRS 610
           R+ PGR    RL+  ++A R  SLN   S       S+TS++S+R+
Sbjct: 107 RETPGRDLIARLKERVNASRKRSLNRENSPSSPNGLSATSSSSSRT 152


>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -2

Query: 614 QLICLSSSRLTTVLSC----ICWKRSNLDSLLSSREASAVAALGEADPDTALYPT 462
           +L  + SS++  +  C    IC+ RS+L S++ + E  AVA+  E   DT + PT
Sbjct: 303 KLSLVESSQVKNLYMCSSNIICYARSDLPSIVPNVETLAVASHCEM-VDTPMLPT 356


>03_04_0040 - 16730622-16730873,16731005-16731340
          Length = 195

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 552 LQFRLTALLA*SERCSRTGRGRPGYCLIP 466
           L++R  A  A  E  SR GRG PG   +P
Sbjct: 40  LRYRAAARFAMLELMSREGRGEPGSVAVP 68


>01_06_1684 +
           39151412-39151702,39152410-39152548,39152926-39153040,
           39153232-39153332,39153688-39153809,39153885-39153976,
           39155288-39155393,39155477-39155631,39155904-39156031,
           39156349-39156479,39157171-39157268,39157371-39158162,
           39158472-39158523
          Length = 773

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 145 GGHLSALYRGG---LTKGSSQTRLCPGRRISNSRRQSTTLGSRRRRDHLGDSGH 297
           G +L    RGG   L K  S     P  R+S++   +  LGSR R + LGD G+
Sbjct: 573 GNNLMHTIRGGVFLLGKAISCLVNTPKYRVSSTAAINYELGSRSRMNILGDRGN 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,591,267
Number of Sequences: 37544
Number of extensions: 280075
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)