Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)                 31   0.99 
SB_21483| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-17)                 28   5.3  
SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12661| Best HMM Match : Pec_lyase_N (HMM E-Value=5.1)               27   9.2  
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)
          Length = 388

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +1

Query: 169 RGGLTKGSSQTRLCPG---RRIS-NSRRQSTTLGSRRRRDHLGDSG 294
           R  LT G  + RL  G   RR++   RR+  TLG RRRR  LG+ G
Sbjct: 52  RRRLTLGQRRRRLTLGQRRRRLTLGQRRRRLTLGQRRRRLTLGNDG 97


>SB_21483| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-17)
          Length = 313

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 385 VTSVYVFSAVSVGIYDVQGCCFRYTFRYFSVRYP 284
           +++VY F  + +G+  V    F    R+++VRYP
Sbjct: 86  LSNVYTFQDIFLGLTSVTSLMFISAERFYAVRYP 119


>SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 554 RSNLDSLLSSREASAVAALGEADPD 480
           R+N DS+  +REA+ +A  G  +PD
Sbjct: 361 RNNRDSIRKAREATLIARAGTLEPD 385


>SB_12661| Best HMM Match : Pec_lyase_N (HMM E-Value=5.1)
          Length = 563

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 197 KRGYVRVVVSAI-PGVSQRRWDLGDDEIISGIADTKISKSISETAALNVI 343
           K+  +RV  S + PG S+ +    DD   +GIA T + +S S  +A +VI
Sbjct: 440 KKETLRVAQSPVAPGPSEPQGLRADDAASAGIAHTPVPESNSACSASSVI 489


>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 147 RTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASVNDAGI 260
           R     +PG   Q VI  +VM G +Y Q Q S +D G+
Sbjct: 652 RARSNPLPGCERQAVIREQVMQGPAYSQ-QWSYDDRGV 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,860,379
Number of Sequences: 59808
Number of extensions: 326030
Number of successful extensions: 950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)