Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    29   2.0  
AF016441-8|AAB65913.2|  212|Caenorhabditis elegans Hypothetical ...    28   6.1  

>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 482 PGRPRPVRLQRSLHARRAVSLNWSASSRYTIAQSSTST 595
           P R RPVR  RS    R  + NW+ +   T +Q+ +S+
Sbjct: 354 PPRKRPVRRSRSRSRSRTPNRNWTRARSRTRSQAKSSS 391


>AF016441-8|AAB65913.2|  212|Caenorhabditis elegans Hypothetical
           protein M03F8.6 protein.
          Length = 212

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 233 ELLIRRPGHNLVWDDPLVRPPRYSALRCPPERVRQQTLVMFGFV-IFHNNVQFETFLT 63
           +L+I R  H++ W+D  +   +YSA    P+R RQ+  +    + I  + V FE   T
Sbjct: 22  DLIIERRPHHVDWEDLFMEYNKYSA----PDRSRQEVNLTLEIIDISFHRVLFELVQT 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,632
Number of Sequences: 27780
Number of extensions: 226416
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)