Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.59 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 188 PLVR-PPRYSALRCPPE 141
           P++R PP +S  RCPPE
Sbjct: 467 PVLRSPPAFSHSRCPPE 483


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -2

Query: 188 PLVR-PPRYSALRCPPE 141
           P++R PP +S  RCPPE
Sbjct: 467 PVLRSPPAFSHSRCPPE 483


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +3

Query: 81  LYVIMENHEPEHDKGLLSDTFWRTPQRAVPGRPYQRVIPNEVMSGSSYQQFQASVNDAGI 260
           L+ I+  H  +H  G+ +      P  A  GRP          S        AS  D+G+
Sbjct: 191 LHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGV 250


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 338 RSRLLFPIYFSIF 300
           RSR++FP+ F IF
Sbjct: 447 RSRIVFPVAFIIF 459


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 578 VLSCICWKRSNLDSLLSSREASAV 507
           V+SC CW   NL    SS     V
Sbjct: 8   VMSCCCWCCDNLGGPGSSSAGGVV 31


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +2

Query: 482 PGRPRPVRLQRSLHARRAVSLNWSASSRY 568
           P  P  +++Q+  H    +   W A  RY
Sbjct: 781 PDVPIELQIQKQSHTPNGIVKTWIAHDRY 809


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 499 WARPTRILPYTRPTTDLP 446
           W R TR+LP  R     P
Sbjct: 524 WERDTRVLPINRKQKVFP 541


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 KRGYVRVVVSAIPGVSQRRW 256
           +R +VR++ +  PG  +RR+
Sbjct: 398 RRAFVRILCACCPGRVRRRY 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,936
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)