Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00640
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein si...    28   4.3  
At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) simi...    27   7.5  
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy...    27   10.0 
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si...    27   10.0 
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy...    27   10.0 

>At4g33810.1 68417.m04798 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 536

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 230 LLIRRPGHNLVWDDPLVRP 174
           +L+R  GH ++WDDPL++P
Sbjct: 244 ILVR--GHTVLWDDPLMQP 260


>At3g23150.1 68416.m02918 ethylene receptor, putative (ETR2) similar
           to putative ethylene receptor; ETR2 [Arabidopsis
           thaliana] gi|3687654|gb|AAC62208.
          Length = 773

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +2

Query: 215 VVVSAIPGVSQRRWDLGDDEIISGIADTKISKSISETAALNVINSHRNSTKNVNRS 382
           ++V  +PG + R W   + EI+  +AD +++ ++   A L      R      NR+
Sbjct: 299 ILVCVLPGGTPRDWTYQEIEIVKVVAD-QVTVALDHAAVLEESQLMREKLAEQNRA 353


>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595; contains Pfam profile PF00331:
           Glycosyl hydrolase family 10
          Length = 576

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 212 GHNLVWDDPLVRPPRYSAL 156
           GHN++W+DP  +P   +AL
Sbjct: 291 GHNILWNDPKYQPKWVNAL 309


>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 352

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 212 GHNLVWDDPLVRP 174
           GHN++WDDP  +P
Sbjct: 150 GHNVLWDDPKYQP 162


>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 576

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 212 GHNLVWDDPLVRP 174
           GHN++WDDP  +P
Sbjct: 291 GHNVLWDDPKYQP 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,467
Number of Sequences: 28952
Number of extensions: 213578
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)