Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00639
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    33   0.042
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    29   0.89 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.1  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             27   3.6  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   4.8  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 402 DPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNP 503
           DPE++   QDP + A       NPA  +++  NP
Sbjct: 540 DPEVLGILQDPAMQAILGQARENPAALMEHMKNP 573


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 567 AAFQVLVDPNLALDHGRPPTMTSDLINI 650
           A  Q LVDP LA D G  PT   DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 65  VNLKNLPTIFVNP*RLTMMIKQMSGLMKLN-QMLKNYVNTN*VPNVKKRRKSIERN 229
           +N+KN  T+ V   +L+ M+K    ++K+   +LKN  +    PN+ K R S + N
Sbjct: 27  LNIKNGETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH----PNIVKYRGSYQTN 78


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 399 LDPEIMAAFQDPEISAAFKDVTS 467
           +DP +++A QDP++  AF+   S
Sbjct: 210 IDPSVVSAIQDPKVCKAFEKKVS 232


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 37  FRGRAYRLLGKFEESSHDLCESL 105
           FRGRAY L       S+D+C  L
Sbjct: 668 FRGRAYPLSSHLHHVSNDVCRGL 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,021
Number of Sequences: 5004
Number of extensions: 48117
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)