Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00639
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical pr...    71   1e-12
Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    28   7.8  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z83241-3|CAB05818.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/55 (52%), Positives = 41/55 (74%)
 Frame = +1

Query: 31  YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHKLSAQ 195
           YKFRGRA RLLGK+ E+  DL  + K+DYD+  NEWL EV+PNA K++++  + +
Sbjct: 186 YKFRGRANRLLGKWVEAKTDLATACKLDYDEAANEWLKEVEPNAHKIQEYNRAVE 240



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = +3

Query: 393 MFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKMLLL 518
           +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK+  L
Sbjct: 323 LFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPKVAKL 364


>Z81120-9|CAB03349.1|  422|Caenorhabditis elegans Hypothetical
           protein T12D8.8 protein.
          Length = 422

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/55 (52%), Positives = 41/55 (74%)
 Frame = +1

Query: 31  YKFRGRAYRLLGKFEESSHDLCESLKIDYDDQTNEWLNEVKPNAEKLRQHKLSAQ 195
           YKFRGRA RLLGK+ E+  DL  + K+DYD+  NEWL EV+PNA K++++  + +
Sbjct: 186 YKFRGRANRLLGKWVEAKTDLATACKLDYDEAANEWLKEVEPNAHKIQEYNRAVE 240



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = +3

Query: 393 MFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKMLLL 518
           +F DPEI AA QDPE+  A  D+  NPAN +KY NNPK+  L
Sbjct: 323 LFSDPEIAAAIQDPEVLPALMDIMQNPANMMKYINNPKVAKL 364


>Z81595-8|CAB54305.1|  345|Caenorhabditis elegans Hypothetical
           protein T22H2.6b protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 188 VPNVKKR--RKSIERNYAEPVKHRSKSTCCSGPSQCC 292
           VP  KK+  RK++ERN    V    K++ C   S CC
Sbjct: 157 VPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCC 193


>Z81595-7|CAB54304.1|  358|Caenorhabditis elegans Hypothetical
           protein T22H2.6a protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 188 VPNVKKR--RKSIERNYAEPVKHRSKSTCCSGPSQCC 292
           VP  KK+  RK++ERN    V    K++ C   S CC
Sbjct: 157 VPMKKKKPARKTVERNQFNEVVCPDKASKCPDGSTCC 193


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 378 DDFNDMFLDPEIMAAFQDPEISAAFKDVTSNPANFIKYQNNPKM 509
           D  ND F+DPE M +  D +++   K    +   F   +N P++
Sbjct: 154 DTLNDSFVDPEFMDSVLDNQLTIKGKKQFLDDGEFFTDRNVPQI 197


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 167 NYVNTN*VPNVKKRRKSIERNYAEPVKHRSKSTCCSGPSQCCSWCNTRGFPRLPW 331
           NY      P+V+K R   ++ +    + RS   C   P  C    + RGF   P+
Sbjct: 402 NYCPKTWPPSVRKMRDQYQKEHVLKSEVRSSPICMKQPDYCLK--SLRGFSECPF 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,483,426
Number of Sequences: 27780
Number of extensions: 272951
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)