Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00639
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.1  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   6.8  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   6.8  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   6.8  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   6.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   6.8  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   6.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.8  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   6.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 127 FDHHSQSLRIHKDRGKI 77
           FD    +LRIH+ RG +
Sbjct: 298 FDEERLTLRIHRGRGSV 314


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = +2

Query: 344 CPWWYACW 367
           C WW  CW
Sbjct: 488 CCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 5/8 (62%), Positives = 5/8 (62%)
 Frame = +2

Query: 344 CPWWYACW 367
           C WW  CW
Sbjct: 541 CCWWKICW 548


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 86  SNNYNYNNYNNNYKPLYYNINY 107


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 86  SNNYNYNNYNNNYKPLYYNINY 107


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 86  SNNYNYNNYNNNYKPLYYNINY 107


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 86  SNNYNYNNYNNNYKPLYYNINY 107


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 319 SNNYNYNNYNNNYKPLYYNINY 340


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 319 SNNYNYNNYNNNYKPLYYNINY 340


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 319 SNNYNYNNYNNNYKPLYYNINY 340


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 465 SNPANFIKYQNNPKMLLL*LNY 530
           SN  N+  Y NN K L   +NY
Sbjct: 308 SNNYNYNNYNNNYKPLYYNINY 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,494
Number of Sequences: 438
Number of extensions: 3601
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)