Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00638
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 52 5e-07
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 42 7e-04
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 41 0.001
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 40 0.003
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 37 0.019
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 33 0.18
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 2.9
04_01_0596 - 7852529-7855185,7855545-7855581 29 3.9
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 29 3.9
03_05_0765 - 27536666-27536767,27536854-27536976,27537161-275373... 28 6.7
07_03_1625 - 28219006-28219041,28219150-28219227,28219318-282193... 28 8.9
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 52.0 bits (119), Expect = 5e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 146 QYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
+YDRQLR+WGD GQ+ALE ICL+ GTE +K
Sbjct: 15 KYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMK 50
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 549 NVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPFMSLLEHLESIDIDALD 725
N+ + +S G G RI ++EH V E+ PD+ DLRL P++ L + +SIDI+ D
Sbjct: 136 NIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHNPWVELKQFAKSIDINDKD 194
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
+VL G+G++T+VD ++ G +R + ELN AV V+E
Sbjct: 52 LVLGGVGSVTVVD--------------VDAECLGQSRAKSVCSFLQELNDAVNAKFVEES 97
Query: 436 PDQILDENPDFFKSFSLVIATTISEK 513
P ++D NP FF F++VIAT + E+
Sbjct: 98 PLALIDTNPSFFSQFTVVIATQLPER 123
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAV 411
+VL G+ ++T+ DD V D+ SNFFL G NR ++ + ELN AV
Sbjct: 120 LVLAGVKSVTLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAV 171
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
N +YD Q+ ++G + Q LE I ++ + ALG E LK
Sbjct: 446 NTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLK 483
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFL---EMSSKGLNRGSEALRLVLELNPAVQGHAV 426
IVL G+G+++++DD V+++D+ +NF + E G +R + + NP V+ AV
Sbjct: 55 IVLAGVGSLSLMDDHLVTEDDLNANFLIPHDESIYGGRSRAEVCCESLKDFNPMVR-VAV 113
Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK*RKVYLNTC 540
++ ++D +F F +++ + K + + + C
Sbjct: 114 EKGDPSLID--GEFLDKFDIIVVSCAPIKTKLLINDNC 149
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
YDRQ+R+WG Q L H+ + TE K
Sbjct: 19 YDRQIRVWGVDAQKRLSKAHVLVCGMNGTTTEFCK 53
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAV 411
+VL G+ ++ + DD V D+ SNFFL G NR ++ + ELN AV
Sbjct: 197 LVLAGVKSVNLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAV 248
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
N +YD Q+ ++G + Q LE I ++ + ALG E LK
Sbjct: 570 NTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLK 607
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 36.7 bits (81), Expect = 0.019
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQE 432
+ L G+ ++T+ D V D+ +NFFL + G NR + + + ELN AV A+ E
Sbjct: 119 LALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSKLQELNNAVLVSALTE 177
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
N +YD Q+ ++G Q LE + ++ + ALG E LK
Sbjct: 477 NSRYDAQISVFGSKLQKKLEEANTFVVGSGALGCEFLK 514
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 33.5 bits (73), Expect = 0.18
Identities = 26/84 (30%), Positives = 35/84 (41%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
+ L G+ +IT+ D V D+ NFFL G NR + ELN AV + E
Sbjct: 213 LALAGVKSITLHDMGNVEMWDLSGNFFLSEDDIGKNRAVACTAKLQELNNAVLISTLTE- 271
Query: 436 PDQILDENPDFFKSFSLVIATTIS 507
D + F V+ T IS
Sbjct: 272 -----DLTNEHLSKFQAVVFTDIS 290
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
N +YD Q+ ++G Q + ++ ++ + ALG E LK
Sbjct: 571 NSRYDAQISVFGSKLQKKMRDANVFVVGSGALGCEFLK 608
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 378 RFGSSVKTFA-RHFQKEITAYIFITNCAIINYSNC 277
R G + + RH Q + +AY F+ NC I YS C
Sbjct: 648 RIGKQIHAYVLRHHQYDSSAY-FVANCLINMYSKC 681
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 378 RFGSSVKTFA-RHFQKEITAYIFITNCAIINYSNC 277
R G + + RH + E +AY F+ NC I YS C
Sbjct: 540 RIGKQIHAYVLRHHRYESSAY-FVANCLIDMYSKC 573
>01_06_0230 +
27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 269 PGRTII-SIFQYPRQ*H*LNICVRFQEHFVRDHPTNEVAGRTVYSSRFVLVI*EMETP*Y 93
P R+I + F+YPR+ N V + F R T E +GR V RF E +
Sbjct: 303 PARSIYENNFKYPRERKFTNYDVNADDKFQRYQQTTENSGRGVVVGRFG----EGDIDYN 358
Query: 92 KTSISKRF 69
K ++SKR+
Sbjct: 359 KATVSKRY 366
>03_05_0765 -
27536666-27536767,27536854-27536976,27537161-27537355,
27538144-27538272,27539025-27539066,27539067-27539229,
27539357-27539492,27539883-27540287,27540419-27540505,
27540877-27541054
Length = 519
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 316 DIGSNFFLEMSSKGLNRGSEALRL-VLELNPAVQGHAVQEPPDQIL 450
DI + F +S KG + L++ +L++ +QG+ +E P+QIL
Sbjct: 453 DIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQIL 498
>07_03_1625 -
28219006-28219041,28219150-28219227,28219318-28219389,
28219468-28219567,28219632-28219708,28219802-28219872,
28219987-28220066,28220143-28220194,28220376-28220431,
28220506-28220551,28220631-28220682,28220787-28220888,
28220967-28221021,28221101-28221180,28221271-28221321,
28221354-28221377,28221742-28221833,28221928-28222057,
28222156-28222230,28222433-28222543,28222637-28222693
Length = 498
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +3
Query: 531 QHLWDINVPFILCQSVGFLGSFRIQIR-EHAVTETH 635
Q+ WD+ F Q G G F+I + HA H
Sbjct: 292 QYDWDVATTFSFLQKYGLTGEFKINVECNHATLSGH 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,364
Number of Sequences: 37544
Number of extensions: 296238
Number of successful extensions: 625
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -