Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00638
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 68 8e-12
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 39 0.003
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 39 0.003
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 38 0.010
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 31 0.64
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 28 6.0
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +1
Query: 247 IEMIVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAV 426
++ +VL G+ + +VDD V DIG NFFL G +R L + ELNP+V G A
Sbjct: 43 LKSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLTELNPSVSGSAS 102
Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK 513
+PP + E+ + +FS+V+A +E+
Sbjct: 103 SQPPTALAMEDVEKLTTFSVVVAANQNEE 131
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/74 (35%), Positives = 48/74 (64%)
Frame = +3
Query: 510 KVTQSLSQHLWDINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPFMSLL 689
++ + ++ L++I VPFI ++ G +G+ RI I+EH + +H +N + DLRLD PF L+
Sbjct: 131 EIDTTFAKVLYNIRVPFICIKTFGLIGTIRICIKEHTIANSHEENPRPDLRLDAPFSKLI 190
Query: 690 EHLESIDIDALDLK 731
E + ++D + L+
Sbjct: 191 EMINETNLDEMTLE 204
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +2
Query: 146 QYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
+YDRQ+RLWG+ GQ+++ S C++ + +L TEILK
Sbjct: 9 RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILK 44
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
++L G+ +TI D D+ + ++L + G NR + + ELN +V VQ
Sbjct: 59 LILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVN---VQVS 115
Query: 436 PDQILDENPDFFKSFSLVIAT 498
D++ +E F K+F LV+ T
Sbjct: 116 TDELTEE---FVKTFDLVVLT 133
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/81 (29%), Positives = 41/81 (50%)
Frame = +1
Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAVQEP 435
++L G+ +TI D D+ + ++L + G NR + + ELN +V VQ
Sbjct: 144 LILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVN---VQVS 200
Query: 436 PDQILDENPDFFKSFSLVIAT 498
D++ +E F K+F LV+ T
Sbjct: 201 TDELTEE---FVKTFDLVVLT 218
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
YDRQ+RLWG Q+ + + + +I LG E+ K
Sbjct: 11 YDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAK 45
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 262 LPGIGAITIVDDCTVSDEDIGSNFFLEMS--SKGLNRGSEALRLVLELNPAVQGHAVQEP 435
L G+ + +VD V E+IG NF + S + + + + + + LN V+ V+E
Sbjct: 49 LAGVDEMHLVDHRLVDTEEIGMNFLYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEED 108
Query: 436 PDQILD-ENPDFFKSFSLVI 492
D E ++ F+LV+
Sbjct: 109 VLSKNDSEIEEYLTKFTLVV 128
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -2
Query: 291 NYSNCTNSWKNYHFNISVPKAVALIKHMCPLS--RALCP*SPH 169
N+ NCT+SW H+N ++P + + + +C + + LC SP+
Sbjct: 310 NWGNCTSSWPE-HYNTNLPYSSSACQALCVSNYFKKLCGCSPY 351
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -2
Query: 303 CAIINYSNCTNSWKNYHFN-ISVPKAVALIKHMCPLSRALCP*SPHKRSCRSYC 145
C NY+ C ++W N+ + + + L H CP + + + K C C
Sbjct: 57 CLAFNYTGCGHNWNNFATSQACYEECLPLDHHKCPAASKIHKTTKGKTVCNDDC 110
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 585 LGSFRIQIREH--AVTETHPDNEQTDLRLDEPFMSLLEHLESID 710
L SF+ Q+ E A T D++ +DL+L + L+ H++ +D
Sbjct: 1517 LNSFKSQLLEKLKAYTNMKVDDKVSDLKLKSLILDLIHHIDVVD 1560
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,174
Number of Sequences: 27780
Number of extensions: 290840
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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