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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00638
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32410.1 68415.m03960 auxin-resistance protein, putative stro...    74   9e-14
At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1) id...    74   1e-13
At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1) id...    51   7e-07
At5g50680.1 68418.m06280 SUMO activating enzyme 1b (SAE1b) ident...    36   0.028
At5g50580.2 68418.m06266 SUMO activating enzyme, putative nearly...    36   0.028
At5g50580.1 68418.m06265 SUMO activating enzyme, putative nearly...    36   0.028
At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1...    35   0.065
At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1...    35   0.065
At4g24940.1 68417.m03572 SUMO activating enzyme 1a (SAE1a) ident...    32   0.46 
At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid t...    31   1.1  
At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid t...    31   1.1  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    30   1.8  
At5g44960.1 68418.m05514 F-box family protein contains F-box dom...    29   2.4  
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t...    29   4.3  
At5g05960.1 68418.m00659 protease inhibitor/seed storage/lipid t...    28   5.6  
At1g30890.1 68414.m03779 integral membrane HRF1 family protein c...    28   7.4  
At1g21530.1 68414.m02693 AMP-binding protein, putative strong si...    28   7.4  
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9...    28   7.4  
At1g59650.1 68414.m06709 expressed protein ; supporting cDNA gi|...    27   9.8  
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si...    27   9.8  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    27   9.8  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    27   9.8  

>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
           similarity to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family
          Length = 523

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 35/88 (39%), Positives = 55/88 (62%)
 Frame = +1

Query: 247 IEMIVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           ++ +V+ GIG+ITIVD   V   D+G+NF ++  S G +R       + ELN +V+ + V
Sbjct: 41  LKNLVIGGIGSITIVDGSKVEIGDLGNNFMVDAKSVGQSRAKTVCGFLQELNDSVKANFV 100

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISE 510
           +E PD ++  +P FF  F+LVIAT + E
Sbjct: 101 EENPDTLISTDPSFFSQFTLVIATQLVE 128



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%)
 Frame = +3

Query: 543 DINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPFMSLLEHLESIDIDAL 722
           + NV  +L +S G  G  RI ++EH   ET PD+   DLRL+ P+  L  ++ESID++  
Sbjct: 140 EANVMLVLARSYGLTGFVRISVKEHTAIETKPDHSLDDLRLNSPWPELKSYVESIDLNVE 199

Query: 723 DLKDH 737
           +   H
Sbjct: 200 EPAAH 204



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +2

Query: 146 QYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           +YDRQLR+WG+ GQSALE+  ICL+N    G+E LK
Sbjct: 7   KYDRQLRIWGELGQSALETASICLLNCGPTGSEALK 42


>At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1)
           identical to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family; identical to cDNA  ubiquitin activating
           enzyme E1-related protein (AXR1) GI:304103
          Length = 540

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 33/88 (37%), Positives = 53/88 (60%)
 Frame = +1

Query: 247 IEMIVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           ++ +VL G+G+IT+VD   V   D+G+NF ++  S G ++       + ELN +V    +
Sbjct: 57  LKNLVLGGVGSITVVDGSKVQFGDLGNNFMVDAKSVGQSKAKSVCAFLQELNDSVNAKFI 116

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISE 510
           +E PD ++  NP FF  F+LVIAT + E
Sbjct: 117 EENPDTLITTNPSFFSQFTLVIATQLVE 144



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = +3

Query: 543 DINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPFMSLLEHLESIDID 716
           D NV  +L +S G  G  RI ++EH + ++ PD+   DLRL+ P+  L   +E+ID++
Sbjct: 156 DANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFVETIDLN 213



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +2

Query: 146 QYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           +YDRQLR+WG+ GQ+ALE   ICL+N    G+E LK
Sbjct: 23  KYDRQLRIWGEVGQAALEEASICLLNCGPTGSEALK 58


>At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1)
           identical to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family; identical to cDNA  ubiquitin activating
           enzyme E1-related protein (AXR1) GI:304103
          Length = 436

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/58 (37%), Positives = 36/58 (62%)
 Frame = +3

Query: 543 DINVPFILCQSVGFLGSFRIQIREHAVTETHPDNEQTDLRLDEPFMSLLEHLESIDID 716
           D NV  +L +S G  G  RI ++EH + ++ PD+   DLRL+ P+  L   +E+ID++
Sbjct: 52  DANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNNPWPELKSFVETIDLN 109


>At5g50680.1 68418.m06280 SUMO activating enzyme 1b (SAE1b)
           identical to SUMO activating enzyme 1b [Arabidopsis
           thaliana] GI:22652852; nearly identical to At5g50580;
           contains Pfam profile PF00899: ThiF family
          Length = 320

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFL---EMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           IVL G+G++T++DD  V+ E   +NF +   E +  G          + + NP V  H  
Sbjct: 50  IVLAGVGSVTLLDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMV--HVS 107

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK*RKVYLNTC 540
            E  D +     DFF+ F +V+    S   +K     C
Sbjct: 108 IEKGD-LSTLGVDFFEKFDVVVIGYSSRATKKAVNEKC 144



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           YDRQ+R+WG   Q  L   H+ +        E  K
Sbjct: 14  YDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCK 48


>At5g50580.2 68418.m06266 SUMO activating enzyme, putative nearly
           identical to SUMO activating enzyme 1b [Arabidopsis
           thaliana] GI:22652852; nearly identical to At5g50680;
           contains Pfam profile PF00899: ThiF family
          Length = 320

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFL---EMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           IVL G+G++T++DD  V+ E   +NF +   E +  G          + + NP V  H  
Sbjct: 50  IVLAGVGSVTLLDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMV--HVS 107

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK*RKVYLNTC 540
            E  D +     DFF+ F +V+    S   +K     C
Sbjct: 108 IEKGD-LSTLGVDFFEKFDVVVIGYSSRATKKAVNEKC 144



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           YDRQ+R+WG   Q  L   H+ +        E  K
Sbjct: 14  YDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCK 48


>At5g50580.1 68418.m06265 SUMO activating enzyme, putative nearly
           identical to SUMO activating enzyme 1b [Arabidopsis
           thaliana] GI:22652852; nearly identical to At5g50680;
           contains Pfam profile PF00899: ThiF family
          Length = 318

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFL---EMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           IVL G+G++T++DD  V+ E   +NF +   E +  G          + + NP V  H  
Sbjct: 50  IVLAGVGSVTLLDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMV--HVS 107

Query: 427 QEPPDQILDENPDFFKSFSLVIATTISEK*RKVYLNTC 540
            E  D +     DFF+ F +V+    S   +K     C
Sbjct: 108 IEKGD-LSTLGVDFFEKFDVVVIGYSSRATKKAVNEKC 144



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           YDRQ+R+WG   Q  L   H+ +        E  K
Sbjct: 14  YDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCK 48


>At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1;
           identical to gi:1703477
          Length = 1077

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAV 411
           I+L G+ ++T+ D+  V   D+ SNF       G NR   ++  + ELN AV
Sbjct: 111 IILAGVKSVTLHDENVVELWDLSSNFVFTEEDIGKNRALASVHKLQELNNAV 162



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           N +YD Q+ ++G   Q  LE   + ++ A ALG E LK
Sbjct: 469 NSRYDAQISVFGSTLQKKLEDARVFVVGAGALGCEFLK 506


>At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1;
           identical to GB:U80808
          Length = 1080

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFLEMSSKGLNRGSEALRLVLELNPAV 411
           ++L G+ ++T+ D+  V   D+ SNF       G NR   +++ + +LN AV
Sbjct: 114 LILAGVKSVTLHDERVVELWDLSSNFVFSEDDVGKNRADASVQKLQDLNNAV 165



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 140 NKQYDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           N +YD Q+ ++G   Q  LE   +  + + ALG E LK
Sbjct: 472 NSRYDAQISVFGAKFQKKLEDAKVFTVGSGALGCEFLK 509


>At4g24940.1 68417.m03572 SUMO activating enzyme 1a (SAE1a)
           identical to SUMO activating enzyme 1a [Arabidopsis
           thaliana] GI:22652850; contains Pfam profile PF00899:
           ThiF family
          Length = 322

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +1

Query: 256 IVLPGIGAITIVDDCTVSDEDIGSNFFL---EMSSKGLNRGSEALRLVLELNPAVQGHAV 426
           IVL G+G++T++DD   + E + +NF +   E    G          + + NP V+  +V
Sbjct: 50  IVLAGVGSVTLMDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVR-VSV 108

Query: 427 QEPPDQILDENPDFFKSFSLVI 492
           ++    +L    DFF+ F +V+
Sbjct: 109 EKGDLSML--GTDFFEQFDVVV 128



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 149 YDRQLRLWGDHGQSALESGHICLINATALGTEILK 253
           YDRQ+R+WG + Q  L   HI +        E  K
Sbjct: 14  YDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCK 48


>At3g53980.2 68416.m05965 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 114

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 506 VKSNAKFISTPVGYKCSFYTLP 571
           +     F + PVGYKC  YTLP
Sbjct: 93  IPKRCNFANRPVGYKCGAYTLP 114


>At3g53980.1 68416.m05964 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 114

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 506 VKSNAKFISTPVGYKCSFYTLP 571
           +     F + PVGYKC  YTLP
Sbjct: 93  IPKRCNFANRPVGYKCGAYTLP 114


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 355 GLNRGSEALRLVLELNPAVQGHAVQEPPDQILDENPDFFKS 477
           G N  S  L  VL  NPA++  AV   PD++  E P  F S
Sbjct: 448 GENISSTELEAVLYTNPAIKEAAVVAKPDKMWGETPCAFVS 488


>At5g44960.1 68418.m05514 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 416

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 424 VQEPPDQILDENPDFFKSFSLVIATTISEK*RKVYLNTCGI*MFLLYFANQLDS*GLLEF 603
           + E PD +L +     ++   V  +  S++ R ++LN  G+ +F L F N     GL++F
Sbjct: 7   INELPDSLLTQILLDLRTKDSVKTSVSSKRWRNLWLNVPGLDLFSLQFTNPHHEEGLIKF 66


>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam profile: PF00501 AMP-binding enzyme;
           identical to cDNA adenosine monophosphate binding
           protein 8 AMPBP8 (AMPBP8)  GI:20799724
          Length = 544

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +1

Query: 349 SKGLNRGSEALRLVLELNPAVQGHAVQEPPDQILDENPDFFKS 477
           S G N  S  +  VL  NPAV   AV   PD+   E P  F S
Sbjct: 445 SGGENVSSVEVEAVLYTNPAVNEAAVVARPDEFWGETPCAFVS 487


>At5g05960.1 68418.m00659 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 506 VKSNAKFISTPVGYKCSFYTLP 571
           +       + PVGYKC  YTLP
Sbjct: 95  IPKRCNIANRPVGYKCGAYTLP 116


>At1g30890.1 68414.m03779 integral membrane HRF1 family protein
           contains Pfam domain PF03878: Hrf1 family
          Length = 269

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 462 WVLIKYLVGWFLDCMTL 412
           W+ +K LVGWFL  M L
Sbjct: 149 WLFVKGLVGWFLQVMLL 165


>At1g21530.1 68414.m02693 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 10 AMPBP10 (AMPBP10)  GI:20799728
          Length = 547

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 355 GLNRGSEALRLVLELNPAVQGHAVQEPPDQILDENPDFFKS 477
           G N  S  +  VL  NP V+  AV   PD++  E P  F S
Sbjct: 445 GENISSAEIETVLYTNPVVKEAAVVAKPDKMWGETPCAFVS 485


>At1g10410.1 68414.m01173 expressed protein similar to ESTs
           gb|N96021 and gb|N96863
          Length = 485

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 316 DIGSNFFLEMSSKGLNRGSEALRL-VLELNPAVQGHAVQEPPDQIL 450
           DI  + F  +S KG     + L++ VL++   +QG+  +E P+QIL
Sbjct: 419 DIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPEELPEQIL 464


>At1g59650.1 68414.m06709 expressed protein ; supporting cDNA
           gi|6520232|dbj|AB028233.1|
          Length = 492

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 316 DIGSNFFLEMSSKGLNRGSEALR-LVLELNPAVQGHAVQEPPDQIL 450
           DI  + F  +S KG     + L+  VL++   +QG+  +E P+QIL
Sbjct: 424 DIDMHRFSYISRKGFEAFLDRLKNCVLDVGLTIQGNKPEELPEQIL 469


>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 9 AMPBP9 (AMPBP9) GI:20799726
          Length = 550

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 355 GLNRGSEALRLVLELNPAVQGHAVQEPPDQILDENPDFFKS 477
           G N  S  +  VL  NP V+  AV   PD++  E P  F S
Sbjct: 450 GENISSAEVETVLYTNPVVKEAAVVAKPDKMWGETPCAFVS 490


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 573 IGKV*KEHLYPTGVEINFALLFTYCSSYH*TE*FKKVWVLIKYLVGWFLDCMTLYCW 403
           + K+  + L PT  + N    F    SY   E +K++WVL      W   C+TL+ W
Sbjct: 263 LNKMLSQKLIPTK-DRNPVKRFAMNISYFFLENWKRIWVLTL----WISICITLFTW 314


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -2

Query: 573 IGKV*KEHLYPTGVEINFALLFTYCSSYH*TE*FKKVWVLIKYLVGWFLDCMTLYCW 403
           + K+  + L PT  + N    F    SY   E +K++WVL      W   C+TL+ W
Sbjct: 263 LNKMLSQKLIPTK-DRNPVKRFAMNISYFFLENWKRIWVLTL----WISICITLFTW 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,229
Number of Sequences: 28952
Number of extensions: 261235
Number of successful extensions: 615
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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