Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00636
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_26429| Best HMM Match : Autophagy_N (HMM E-Value=2.8)               29   2.1  

>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/75 (29%), Positives = 27/75 (36%)
 Frame = -3

Query: 385 HATLRDVWTYATXXXXXXXXXXVSHFIHKYYNIRNFESQNIQ**HIKHGGTTHAHTR*EN 206
           H  L   W  A             H + +YY     +SQNIQ  H K G           
Sbjct: 585 HPELLQTWRRAGPFEYGNRLQDSPHLVRRYYLFAGDDSQNIQ-VHFKSGFPVVTVPLPSR 643

Query: 205 *NVCEFFFRSPLSRS 161
             +C+F  R PLS S
Sbjct: 644 RELCQFTLR-PLSES 657


>SB_26429| Best HMM Match : Autophagy_N (HMM E-Value=2.8)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -1

Query: 495 FLSKKKQ*INKM-YFMLIYETVNDDERDTSERSRKNARTRLSVT-FGRTRRFDVFAVCAR 322
           F    K+ +N++ YF+L+Y  + +D+R+ +E S    R  L+   FG  +   V A   +
Sbjct: 79  FRKTVKKFLNELIYFLLLYMQITEDQRNLAEHSTFCRRNMLANNEFGNRQNCLVPANAKK 138

Query: 321 AFRI 310
           A RI
Sbjct: 139 ASRI 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,550,859
Number of Sequences: 59808
Number of extensions: 158630
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)