Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00636
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   5.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.4  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   5.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 447  IYETVNDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCA 325
            +Y   ++ E  TS++   N  T  +    +TRR+D +   +
Sbjct: 1215 VYTKADNAEEPTSQKVPPNQLTHEASELDKTRRYDFWVTAS 1255


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 194 TDVLVFLTCVCVRCTTV 244
           T VL+F  CVCV   T+
Sbjct: 3   TIVLIFGFCVCVGALTI 19


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 452 IKYILFIYCFFF 487
           IKY+LFI+ F F
Sbjct: 8   IKYLLFIFNFVF 19


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 196 CEFFFRSPLSRSRAH*CHDGNRID 125
           C+ FFR  ++++  + C  GN  +
Sbjct: 207 CKGFFRRSITKNAVYQCKYGNNCE 230


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 196 CEFFFRSPLSRSRAH*CHDGNRID 125
           C+ FFR  ++++  + C  GN  +
Sbjct: 4   CKGFFRRSITKNAVYQCKYGNNCE 27


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -1

Query: 447 IYETVNDDERDTSERSRKNARTRLSVTFGRTRRFDVFAVCARAFRILYINIIIFEIS 277
           + E +  D+R   ER +  +   ++ +  R +  D+ A C +A   +Y+++I+  +S
Sbjct: 65  VQENIVIDKRPWWERYQPISYKWITRSGTREQFIDMVARCNKAGVRIYVDVIMNHMS 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,893
Number of Sequences: 438
Number of extensions: 1745
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)