Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00635
(579 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 43 2e-04
SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.042
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.042
SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2) 35 0.055
SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_46234| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.7) 29 2.7
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7) 28 4.8
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) 27 8.4
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/41 (56%), Positives = 27/41 (65%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQIPASSFE*AGVLTHLKFENR 451
FGSS ASS YQN PT R P + + G+LT+LKFENR
Sbjct: 78 FGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFENR 117
>SB_5288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 35.5 bits (78), Expect = 0.032
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQIPASSFE 490
FGSS ASSAYQ WPT + H + ++
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSLSGFGYQ 48
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -2
Query: 251 FPLTST*PGIVHHLSGPSICA 189
FPL S GIVHHLSGP+ CA
Sbjct: 9 FPLASPYSGIVHHLSGPNRCA 29
>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQIPASSF 493
FGSS ASSAYQ WPT + H + ++
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSLSGFNY 47
>SB_52007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 61 FGSSRIASSAYQKWPTRNSHSL 82
>SB_40315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 58 FGSSRIASSAYQKWPTRNSHSL 79
>SB_32500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_24543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_20448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 59 FGSSRIASSAYQKWPTRNSHSL 80
>SB_9995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_9493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 59 FGSSRIASSAYQKWPTSNSHSL 80
>SB_4968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_3995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTKNSHSL 42
>SB_1350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_59236| Best HMM Match : Attractin (HMM E-Value=8.2)
Length = 125
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 100 FGSSRIASSAYQKWPTRNSHSL 121
>SB_53668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_53194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_47973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_40285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_19187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_16426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 21 FGSSRIASSAYQKWPTRNSHSL 42
>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ WPT + H +
Sbjct: 143 FGSSRIASSAYQKWPTRNSHSL 164
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -1
Query: 255 RVSPDFDLTRHSSPSFGSQHLCS 187
RVS F L RHSSPSFGSQ + S
Sbjct: 42 RVSSGFTLFRHSSPSFGSQQMRS 64
>SB_161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
+GSS ASSAYQ WPT + H +
Sbjct: 21 YGSSRIASSAYQKWPTRNSHSL 42
>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1
Query: 324 ISLSPLYPVPTIDLHVR 274
ISLSPLYP TIDLHVR
Sbjct: 38 ISLSPLYPNLTIDLHVR 54
>SB_24609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPT 526
FGSS ASSAYQ WPT
Sbjct: 21 FGSSRIASSAYQKWPT 36
>SB_11440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSA Q WPT + H +
Sbjct: 78 FGSSRIASSALQKWPTRNSHSL 99
>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQIPAS 499
FGSS ASSAYQN P R PAS
Sbjct: 21 FGSSRIASSAYQNGPLGTRIHCPAS 45
>SB_40592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 573 FGSSHSASSAYQNWPTWHRHQI 508
FGSS ASSAYQ PT + H +
Sbjct: 21 FGSSRIASSAYQKGPTRNSHSL 42
>SB_46234| Best HMM Match : Herpes_BLRF2 (HMM E-Value=2.7)
Length = 271
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 578 LRLVHPTAPVLLTKIGPLGTVIRFRLHRSSKPEFS 474
LRL+HP+ P L+ + GT +R R S KPE S
Sbjct: 60 LRLIHPSLPRLIKQ--RYGTELRSRTLASIKPEIS 92
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -2
Query: 578 LRLVHPTAPVLLTKIGPLGTVIRFRLHRSSKPEFSPI*SL 459
LRLVHP+ P L+ + GT +R R KPE S SL
Sbjct: 451 LRLVHPSLPKLVKR--RYGTELRSRTLALIKPEISQALSL 488
>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
Length = 703
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 182 RSEHKCWDPKD--GELCLVRSKSGETRWRTVAILTCKSIVGTGYRGERLIEPSSSWFRPK 355
+++ C D ++ GE +KS +T+ ++ +C+S++ TG + L + S RP+
Sbjct: 303 QNDLSCSDSENEGGESFSTTAKSKDTKANDYSMTSCRSVLATGLNEQSLAKRKESIRRPE 362
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 227 LVRSKSGETRWRTVA--ILTCKSIVGTGYRG 313
L++SK E W +LTC S +GTG RG
Sbjct: 603 LIKSKGYEFMWNEHLGYVLTCPSNLGTGLRG 633
>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
Length = 307
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 221 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 129
V L+ S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,989,062
Number of Sequences: 59808
Number of extensions: 374729
Number of successful extensions: 828
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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