Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00635
         (579 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane trans...    38   0.034
BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48 rece...    29   9.0  
AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein...    29   9.0  
AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48 rece...    29   9.0  
AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48 rece...    29   9.0  

>AJ276485-1|CAB81951.1|  283|Homo sapiens integral membrane
           transporter protein protein.
          Length = 283

 Score = 37.5 bits (83), Expect = 0.034
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 257 WRTVAILTCKSIVGTGYRG 313
           WR+VA+LTCKS+V  GYRG
Sbjct: 16  WRSVAVLTCKSVVRPGYRG 34


>BC119786-1|AAI19787.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 139 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPMEDRSDSDVQIDR 294
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141334-1|AAF78765.1| 1076|Homo sapiens placenta apolipoprotein
           B48 receptor type 2 protein.
          Length = 1076

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 139 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPMEDRSDSDVQIDR 294
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141333-1|AAF76256.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 139 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPMEDRSDSDVQIDR 294
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


>AF141332-1|AAF76255.1| 1088|Homo sapiens apolipoprotein B48
           receptor protein.
          Length = 1088

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 139 RTPEASRFQSVNEGAL*AQMLGPERW*TMPGQVEVRGNPMEDRSDSDVQIDR 294
           RT EA+  Q+    A+  Q  G     +  GQV++RG   E R D  ++ DR
Sbjct: 426 RTEEAAESQTAGREAVGGQEAGE----SFEGQVDLRGKEAEMRQDLGIRADR 473


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,499,904
Number of Sequences: 237096
Number of extensions: 1786212
Number of successful extensions: 6601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6601
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)