Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00635
         (579 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08480.1 68417.m01399 mitogen-activated protein kinase, putat...    30   1.3  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    29   2.2  
At1g80520.1 68414.m09437 expressed protein                             27   6.8  
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    27   9.0  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   9.0  
At2g38320.1 68415.m04708 expressed protein                             27   9.0  

>At4g08480.1 68417.m01399 mitogen-activated protein kinase, putative
           similar to mitogen-activated protein kinase [Arabidopsis
           thaliana] gi|1255448|dbj|BAA09057; contains Pfam
           PF00069: Protein kinase domain
          Length = 773

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = -1

Query: 390 KFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATVLHRVSPDFDLTRHSSPS 211
           K  +D+   E   G   +    +   P+  +P +DL      +L   +PD ++ R  S S
Sbjct: 375 KEVVDSGTVENRRGIKGVRPSVLKPPPVMKLPPVDLPGSSWDILTHFAPDSEIVRRPSSS 434

Query: 210 FGSQHLCSE 184
             S++ C E
Sbjct: 435 SSSENGCDE 443


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 513 QIPASSFE*AGVLTHLKFENRLRSFR 436
           ++PAS+FE + V T  +FE   RSFR
Sbjct: 288 KVPASNFESSSVQTSFEFEKPKRSFR 313


>At1g80520.1 68414.m09437 expressed protein
          Length = 192

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +2

Query: 236 SKSGETRWRTVAI--LTCKSIVGTGYRGERLIEPSSSWFRPKFPSG*LASI*NFKTVSSG 409
           S SG  RW++     L   S  G G + ERL+  + +  R       L S  N K VSSG
Sbjct: 113 SSSGNGRWKSARKKRLVMPSN-GNGVKEERLLLTNGTPCR-------LDSFSNPK-VSSG 163

Query: 410 KAND*RHWGRNDLNLFSNFKW 472
             +D  HWG  D+      KW
Sbjct: 164 YEDDDNHWGNKDVE--EKIKW 182


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 308 YTQFRRSICTSESLRSSIGFPLT 240
           YTQFR+S+    S+RSS   PL+
Sbjct: 195 YTQFRKSVEAKCSIRSSTRIPLS 217


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 309 LYPVPTIDLHV-RIATVLHRVSPDFDLTRHSSPSFGSQHLCSERAFIH*LETRRLGSAKI 133
           LY    +  HV + A V+H +  D  L    + S G QHL +  A +H +E  +L +  +
Sbjct: 229 LYDDVVVFDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQHLENLVAKLHDIEPPKLAAGNV 288

Query: 132 TNVAR*FHP 106
               R F P
Sbjct: 289 NLQTRQFGP 297


>At2g38320.1 68415.m04708 expressed protein
          Length = 410

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 425 RHWGRNDLNLFSNFKWVRTP 484
           RHW  +D+ +F+++ W R P
Sbjct: 215 RHWTNSDIIVFNSYLWWRMP 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,189
Number of Sequences: 28952
Number of extensions: 267691
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)