Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00634
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 124 6e-29
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 33 0.19
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 33 0.33
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.76
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 31 1.3
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 30 1.7
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 28 9.3
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 124 bits (300), Expect = 6e-29
Identities = 59/65 (90%), Positives = 62/65 (95%)
Frame = +1
Query: 58 VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 237
VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 238 DEQDR 252
DEQDR
Sbjct: 61 DEQDR 65
Score = 111 bits (267), Expect = 6e-25
Identities = 58/85 (68%), Positives = 65/85 (76%)
Frame = +3
Query: 255 ITIKSTAISMFFELEEKDLVFITNPDQREKRETGFLINLIDSPGHVDFSSEVTAALRVTD 434
ITIKSTAIS+++EL E D +IT P ++ +E GFLINLIDSPGHVDFSSEVTAALRVTD
Sbjct: 67 ITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTAALRVTD 124
Query: 435 GALXXXXXXXXXXXQTETVLRQAIA 509
GAL QTETVLRQAIA
Sbjct: 125 GALVVVDCVSGVCVQTETVLRQAIA 149
Score = 84.2 bits (199), Expect = 1e-16
Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 458 CVWCVCTNRNSTA-SGYCERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIA 634
CV VC + ERIKP+LFMNKMDR YQTF RIVE++NVIIA
Sbjct: 132 CVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQTFARIVESINVIIA 191
Query: 635 TYNDDGGPMGEVRVDPSKALLVSG 706
TY+D+ GPMG ++V P K + G
Sbjct: 192 TYSDEDGPMGNIQVGPEKGTVAFG 215
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 679 P*QGSVGFGSGLHGWAFTLKQFS 747
P +G+V FGSGLHGWAFTLKQ S
Sbjct: 207 PEKGTVAFGSGLHGWAFTLKQIS 229
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 679 P*QGSVGFGSGLHGWAFTLKQFS 747
P +G+V FGSGLHGWAFTLKQ S
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQIS 56
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 109 IRNMSVIAHVDHGKSTLTDSLVSKAGIIA 195
+RN S++AHVDHGKSTL D L+ G I+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTIS 1969
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 33.5 bits (73), Expect = 0.19
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 261 IKSTAISMFFELEEKDLVFITNP----DQREKRETGFLINLIDSPGHVDFSSEVTAALRV 428
IK A S F E+E + + + + R+K+ IN++D+PGH DF+ + L
Sbjct: 48 IKKGATSDFMEIERQRGISVATSVLAFNYRDKK-----INILDTPGHKDFAEDTFRTLTA 102
Query: 429 TDGALXXXXXXXXXXXQTETVL 494
D + QTE ++
Sbjct: 103 VDSVIVVIDVAKGVEEQTEKLV 124
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 94 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARA 207
D+ + R +I+H D GK+TLT+ L+ G I A A
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGA 42
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/85 (22%), Positives = 40/85 (47%)
Frame = +1
Query: 55 MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 234
+ N+ ++ + +MD IRN+++ H+ GK+ D L + A+ G+ +T
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171
Query: 235 KDEQDR*SPLNLRPSLCSSSLKRKI 309
+ + NL ++C + + R I
Sbjct: 172 RLLKHAVQE-NLAITICINKIDRLI 195
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 219
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 342 KRETGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAI 506
K +G I ID+PGH F+S VTD + QT +R A+
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAM 125
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 219
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 503 YCERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVENVNVIIAT 637
+ E I+P L +NK+DR + Q+I+E VN I T
Sbjct: 126 WLENIRPCLVLNKIDRLITELKYSPSEAFIHLQQILEQVNAITGT 170
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 436 PSVTRSAAVTSEEKSTCPGESIKLIKKPVSRFSRWSGFVMN 314
P R A TCPGE ++L+ + + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 493 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 353
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 475 THTPDTQSTTTRAPSVTRSAAVTSEEKST 389
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_50728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 437 SPCGC*LCVWCVCTNR 484
SPC C+WC C+ R
Sbjct: 18 SPCALYFCIWCECSKR 33
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 475 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL 365
TH+P + TTT AP+ E C G+ ++L
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVEL 648
>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 678 STRTSPMGPPSSLYVAIMTLTFSTIRWNV 592
+T T P PP+SLY + + T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = -2
Query: 514 ALAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPVSRFSR 335
+L ++ +++VS H+ S + A T++ TSEE+S ES I + +SRFS
Sbjct: 785 SLTLSTQASVSRSIHSAPP-SVQSSAIFSTQATVSTSEEQSRVYLESTPTISESLSRFS- 842
Query: 334 WSGFVMNTKSFSSS 293
S + + F+S+
Sbjct: 843 -SSYHIGASDFTST 855
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,850,919
Number of Sequences: 59808
Number of extensions: 522845
Number of successful extensions: 1788
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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