Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00634
(749 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 33 0.004
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 33 0.004
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 29 0.035
AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 25 0.57
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 25 1.0
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 25 1.0
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 25 1.0
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 25 1.0
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 5.3
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 7.1
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 9.3
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 KRETG-FLINLIDSPGHVDFSSEVTAALRVTDGAL 443
K ET + + +ID+PGH DF + D A+
Sbjct: 79 KFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 32.7 bits (71), Expect = 0.004
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 91 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 186
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 KRETG-FLINLIDSPGHVDFSSEVTAALRVTDGAL 443
K ET + + +ID+PGH DF + D A+
Sbjct: 79 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAV 113
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 29.5 bits (63), Expect = 0.035
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 118 MSVIAHVDHGKSTLTDSL 171
++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165
Score = 24.6 bits (51), Expect = 1.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 348 ETGFLINLIDSPGHVDFSSEVTAALRVTD 434
E+G + +D+PGH F S +TD
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITD 218
>AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9
methyltransferase protein.
Length = 683
Score = 25.4 bits (53), Expect = 0.57
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 115 NMSVIAHVDHGKSTLTDSL 171
N+ I HV HGKST+ ++
Sbjct: 44 NIGTIGHVAHGKSTIVKAI 62
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 KRETG-FLINLIDSPGHVDFSSEVTAALRVTDGAL 443
K ET + + +ID+PGH DF + D A+
Sbjct: 6 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAV 40
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 24.6 bits (51), Expect = 1.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 454 TVCLVCVYKPKQYCV 498
TV LVC+Y PK Y +
Sbjct: 749 TVTLVCLYSPKIYII 763
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 KRETG-FLINLIDSPGHVDFSSEVTAALRVTDGAL 443
K ET + + +ID+PGH DF + D A+
Sbjct: 22 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAV 56
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 24.6 bits (51), Expect = 1.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 454 TVCLVCVYKPKQYCV 498
TV LVC+Y PK Y +
Sbjct: 839 TVTLVCLYSPKIYII 853
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.2 bits (45), Expect = 5.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -3
Query: 96 VHHPTDLVYREIHH 55
+HHP + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.8 bits (44), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 460 TQSTTTRAP-SVTRSAAVTSEEKSTC 386
+ STTT +P + T+S V + STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 608 QYAGTSGIVLQLQVG 564
+Y SG+V+QLQ G
Sbjct: 1549 EYGAVSGLVVQLQRG 1563
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,175
Number of Sequences: 438
Number of extensions: 4963
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -