Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00632
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            69   2e-13
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    45   3e-06
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    24   3.9  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    24   3.9  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    24   3.9  
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    24   5.1  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    24   5.1  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 68.5 bits (160), Expect = 2e-13
 Identities = 33/78 (42%), Positives = 45/78 (57%)
 Frame = +2

Query: 263 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPD 442
           V  +IWDTAGQER+ SL   +YRGA   ++V+D+   ++F   ++W  E   QASP    
Sbjct: 73  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQASP---- 128

Query: 443 NFPFVILGNKVDLDNRAV 496
           N    + GNK DL N  V
Sbjct: 129 NIVIALAGNKADLANSRV 146



 Score = 46.4 bits (105), Expect = 8e-07
 Identities = 20/44 (45%), Positives = 33/44 (75%)
 Frame = +3

Query: 123 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVD 254
           K+++LG+S VGK+SL+ +FV  +F    ++TIGA FLT+ + +D
Sbjct: 26  KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCID 69



 Score = 29.1 bits (62), Expect = 0.14
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 532 NDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPTKS 663
           N + + ETSAK AVNV   F  IA+     E      N  PT++
Sbjct: 159 NRLLFMETSAKTAVNVNDIFLAIAKKLPKNEGAGPQQNIRPTQN 202


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
 Frame = +2

Query: 263 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLES-WRDEFLIQASPRDP 439
           V++ +WDTAGQE +  L    Y   D  ++ + V +P++F+++ S W  E         P
Sbjct: 54  VSLGLWDTAGQEDYDRLRPLSYPQTDVFLICYSVASPSSFENVTSKWYPEI----KHHCP 109

Query: 440 DNFPFVILGNKVDL--DNRAVSV 502
           D  P +++G K+DL  D   +S+
Sbjct: 110 D-APIILVGTKIDLREDRETISL 131



 Score = 29.5 bits (63), Expect = 0.10
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 120 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVD 254
           +K +++GD  VGKT ++  +    F  +Y  T   D  +  ++VD
Sbjct: 7   IKCVVVGDGTVGKTCMLISYTTDSFPGEYVPT-SFDNYSAPMVVD 50


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 132 ILGDSGVGKTSLMN 173
           ++G SG GKT+L+N
Sbjct: 131 VMGSSGAGKTTLLN 144


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 132 ILGDSGVGKTSLMN 173
           ++G SG GKT+L+N
Sbjct: 131 VMGSSGAGKTTLLN 144


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 132 ILGDSGVGKTSLMN 173
           ++G SG GKT+L+N
Sbjct: 109 VMGSSGAGKTTLLN 122


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSN 200
           K+ +  K    V + G+ G GKT+ +N F  +KF++
Sbjct: 8   KLGASGKKPFTVFVEGNIGSGKTTFLNHF--QKFND 41


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  KMSSRKKLLLKVIILGDSGVGKTSLMNQFVNKKFSN 200
           K+ +  K    V + G+ G GKT+ +N F  +KF++
Sbjct: 8   KLGASGKKPFTVFVEGNIGSGKTTFLNHF--QKFND 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 750,963
Number of Sequences: 2352
Number of extensions: 15137
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)