Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00632
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 361 RNCPQHV*VLGELERRIPD 417
           +N PQH  +L EL ++IPD
Sbjct: 376 QNHPQHPDILRELLKKIPD 394


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 53  LYCIFHHCVKIVVQNVFTEKAPAKGNYPG*QRC 151
           +Y IF+   +   + + T+ A A+GN P    C
Sbjct: 324 IYSIFNTEFREAFKRILTKGARARGNQPSTSEC 356


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 115 SFFREDILHNNFYTMMKNTI*SHSLSALLTSNEI 14
           ++F ED+  N+FY M+ +      LS  L   +I
Sbjct: 220 NYFTEDVGLNHFYFMLNHNYPPFMLSNSLNFPQI 253


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 115 SFFREDILHNNFYTMMKNTI*SHSLSALLTSNEI 14
           ++F ED+  N+FY M+ +      LS  L   +I
Sbjct: 220 NYFTEDVGLNHFYFMLNHNYPPFMLSNSLNFPQI 253


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 594 LKS*LYIDSFFGTCLKIRD 538
           L S +++ SFFG C  IR+
Sbjct: 58  LGSIIFVISFFGCCGAIRE 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,748
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)