Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00630
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 30 0.41
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.72
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.7
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 2.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 3.8
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 3.8
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 3.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 5.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 6.7
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.8
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.8
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 8.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 8.8
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 25 8.8
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 455 SRPFAARFDSLTRLPYVRVAMWKKGKEKTKNPEQIDVYTVQQKGV 589
S+ FA +L P + WK KE PE+I + + +KGV
Sbjct: 47 SKHFAFNVVTLEEPPKAKYLHWKYSKEDAHKPERIALAVLLEKGV 91
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 230 KLRQVTNLASIEPTPVTNSKTILEFDSLEIVLNLRDSFAANVLSL 96
++ VTN S P T+S+ + FD++ + ++ DSF+ + + L
Sbjct: 559 EVETVTNDPSFSQQPGTHSRILRNFDAISSIDSIPDSFSDSAVDL 603
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 313 KHFSPPRRHVLDLRWPSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKTL 465
KH P + L W S + L++ + T++ L NQ+ +S+ +TL
Sbjct: 430 KHLVPENKSKLQYVWQKKESLPYANLTSASNTHFFLSENQNDTSERLTRTL 480
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 251 KNPSAAADGEGPTVQIREPGSSTFRPQEDTFWIFGGHPQTPRDQVV*AR*TEH 409
+N AA P +Q ++ + + PQ+ + +PQ P+ +V A+ TEH
Sbjct: 213 QNYPPAASSSAPPMQYQQ---TAYPPQQAPYPPVQAYPQAPQQPIVVAQPTEH 262
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 210 VRNLPEFPADQAARKTLAPQPT 275
V NLP +P + A K + P PT
Sbjct: 406 VNNLPSYPTNLARPKAIKPMPT 427
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 536 KTKNPEQIDVYTVQQKGVRKRVIKTTLSAFWKQDSVI--RINNVDDKQETPNSEKDIRSK 709
K +NP + VYTV +GV +R+ K+D + RI + D E P + I+
Sbjct: 4 KVQNPNNVRVYTVSGEGVTQRLPNWISKRKLKKDYALSHRIELLQD-FEYPEASNRIKCT 62
Query: 710 LD 715
D
Sbjct: 63 RD 64
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 618 LNVVFITRFLTPFC*TVYTSICSGFFVFSLPFFH 517
+++VF+TR L P C +++C +F + FH
Sbjct: 204 ISIVFLTRNLYPICQQAGSNLCK-LLLFGIIVFH 236
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 379 PSGLSTMNRTYYALFWNQDSSSKCEL 456
PSG S + +T YAL W S +K +
Sbjct: 530 PSGTSFVVKTLYALSWAHSSKTKLNI 555
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 248 PKNPSAAADGEGPTVQIREPGSSTFRP 328
P +P AA +GP + +EP S+ P
Sbjct: 531 PISPDAALQSDGPLKKAKEPEESSITP 557
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 676 LLFVVHVVDAYNRVLLPECA*RCFYHTFSHTFLLNRVHVY 557
L + +++ A V+L E A R F +F+H F L R H++
Sbjct: 424 LCLISYLMIAKKMVVLQE-ANRLFLKSFAHPFHLERYHLH 462
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 524 KGKEKTKNPEQIDVYTVQQKGVRKRVIKTTLSAFWKQDSVIRINNVD 664
KG+E K+ +DV VQ+K + +V + + + DS+ I N D
Sbjct: 107 KGREPKKSQLGLDVLAVQKKKEKSQVEGRSELSQVENDSLESIGNYD 153
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +2
Query: 491 RLPYVRVAMWKKGKEKTKN 547
++P + + W+ GK++TKN
Sbjct: 22 KIPSIGLGTWRSGKDETKN 40
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 70 CCLLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQIKPP 249
C +YV+ EST E RL +I SN++ E +T G R + P
Sbjct: 96 CEAIYVLQNFESTDFNKEKERLVSIILESNNKSNNELITKNGYGNTRLDLLNQLSEYISP 155
Query: 250 E 252
E
Sbjct: 156 E 156
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 756 GIMPVSLESGLSAISNLDLISFSLFGVSCLSSTLLMRITESCFQNALNV 610
G+ S S +S + SF+LFG CL+ +I S F+N L V
Sbjct: 33 GLKHQSTSSKAMPVSAFYIPSFNLFGKGCLAEA-AKQIKMSGFKNTLIV 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,929
Number of Sequences: 5004
Number of extensions: 75963
Number of successful extensions: 235
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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