Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00630
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 32 0.43
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 32 0.43
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 32 0.57
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 30 2.3
04_04_0718 + 27536657-27537688 29 3.0
09_02_0481 - 9772783-9773985 29 4.0
02_05_0189 + 26590489-26591529 29 5.3
12_01_0162 - 1220348-1220428,1220585-1220671,1220757-1220875,122... 28 7.0
04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940 28 7.0
12_02_0879 + 23960084-23961551,23961796-23962184 28 9.2
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075... 28 9.2
06_03_1259 - 28800954-28802468 28 9.2
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 28 9.2
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 9.2
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
+N ++ W V RG + VS K ++ E +++I + G TFR + D
Sbjct: 233 MNDTKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHD 291
Query: 338 TFWIFGGHPQ 367
FWI HP+
Sbjct: 292 RFWILSAHPE 301
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
+N ++ W V RG + VS K ++ E +++I + G TFR + D
Sbjct: 233 MNDTKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHD 291
Query: 338 TFWIFGGHPQ 367
FWI HP+
Sbjct: 292 RFWILSAHPE 301
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
+N ++ W V RG + VS K ++ E ++++ + G TFR + D
Sbjct: 233 MNDTKAWEVDTLRGH-MNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHD 291
Query: 338 TFWIFGGHPQ 367
FWI HP+
Sbjct: 292 RFWILAAHPE 301
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 440 PRSASSRPFAARFDSLTRLPYVRVA 514
PRSAS +P AA D L RLP +R A
Sbjct: 375 PRSASPQPQAAADDWLARLPILRAA 399
>04_04_0718 + 27536657-27537688
Length = 343
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 303 SRIWTVGPSPSAAALGFFGRLDLLE 229
+R+ T PSP+AAALGF G + ++
Sbjct: 185 ARLLTARPSPNAAALGFVGEVSRVD 209
>09_02_0481 - 9772783-9773985
Length = 400
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = +3
Query: 222 PEFPADQAARKTLAPQPTVKGLLSRFGSQAQALFAPKKTRFGSSVAIHKLRETKWFKHDE 401
P+F A AA LA L A L PK + FG S +RE +
Sbjct: 16 PQFEAAVAAMWPLASFIVADAFLYWVNESAAVLGVPKMSFFGISAFAQVMRELR-----N 70
Query: 402 QNILCAVLESG 434
++ LCAV+E G
Sbjct: 71 RHGLCAVMEPG 81
>02_05_0189 + 26590489-26591529
Length = 346
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 303 SRIWTVGPSPSAAALGFFGRL 241
+R+ T PSP AAALGF G +
Sbjct: 188 ARLLTARPSPDAAALGFVGEV 208
>12_01_0162 -
1220348-1220428,1220585-1220671,1220757-1220875,
1221543-1221603,1221915-1222307,1223612-1223914
Length = 347
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 345 QNVSSWGRKVLEPGSRIWTV-GPSPSAAALGF 253
+ V S GR+++E ++W V GPS A A F
Sbjct: 34 EEVGSLGRRLVEENKKLWVVAGPSICARATSF 65
>04_04_0413 + 25032061-25032304,25032604-25032627,25033618-25033940
Length = 196
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 550 RTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRGRQTGDTEQRKR 696
R + + +TE CE+ +++ E +L +QR RQ G + R R
Sbjct: 144 REAEKCNAATETCEEARERSEAAISKEKKLTALWEQRARQLGWQDSRPR 192
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +1
Query: 358 PSTNSARPSG--LSTMNRTYYALFWNQDSSSKCELKTLCRQIRLSHQTTICTRRHVEEG* 531
PS NS + + ++ MN A W + K L R I LS ++ + + +
Sbjct: 382 PSVNSEKQTDRKMTVMNVAKNARVWQKKEEEKISPVKLSRSINLSSKSLLSIKMRAVKKE 441
Query: 532 RKNKEPRTDRRVHGSTERCEKTCDKN 609
+ +++++V+G+ +KN
Sbjct: 442 KPASLVKSNKKVYGAENAVADVKEKN 467
>09_04_0717 +
19706160-19706327,19707036-19707157,19707408-19707510,
19707644-19707734,19707960-19708132,19708534-19708622,
19708995-19709085,19709272-19709361,19709807-19709854,
19710033-19710104,19710181-19710274,19710350-19710494,
19710809-19710951,19711601-19711751,19712276-19712449,
19712799-19712874
Length = 609
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 86 TYNKQHFHNICGAWYRAYRSTRLHGS 9
+Y K HF +C + +RAYR+ HGS
Sbjct: 482 SYEKAHFA-LCASEHRAYRTMTPHGS 506
>06_03_1259 - 28800954-28802468
Length = 504
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 158 FDSLEIVLNLRDSFAANVLSLLQITYNKQHFHNICGAWYRAYRSTRLHG 12
FD+L + LRD A+ LL+ ++H+ + AW R Y LHG
Sbjct: 220 FDTLAVDPALRDDIRAD---LLRFAARREHYARVGRAWKRGY---LLHG 262
>04_03_0501 +
16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +1
Query: 541 KEPRTDRRVHGSTERCEKTCDKNNVKRILEARLCYTHQQRG--RQTG-DTEQRKRYQI*V 711
KE ++ R + R +K K K++ EAR + Q+R + G DT QRKR + +
Sbjct: 167 KEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGI 226
Query: 712 GYGTKSRFER 741
Y + FE+
Sbjct: 227 DYNAEIPFEK 236
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +3
Query: 207 EVRNLPEFPADQAARKTLAPQPTVKGLLSRFGSQAQALFAPKKTRFGSSVAIHKLRETKW 386
EV + + A++ L + + K +L+ S A+ K+R + H+L ETK
Sbjct: 2663 EVISAMFYHAEKERSSALQSETSAKSMLAEASSLAE------KSRTSFELHAHELAETKA 2716
Query: 387 FKHDEQNILCAVLES-GFILE 446
+DE N L +E G ILE
Sbjct: 2717 AANDEANKLAVWVEKHGRILE 2737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,735,884
Number of Sequences: 37544
Number of extensions: 518456
Number of successful extensions: 1611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -