Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00630
         (756 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124779-1|BAC85944.1|  163|Homo sapiens protein ( Homo sapiens ...    32   2.6  
U24105-1|AAB70879.1| 1224|Homo sapiens coatomer protein protein.       31   3.4  
BC038447-1|AAH38447.1| 1233|Homo sapiens COPA protein protein.         31   3.4  
AL513282-3|CAI12455.1| 1233|Homo sapiens coatomer protein comple...    31   3.4  
AL513282-2|CAI12454.1| 1224|Homo sapiens coatomer protein comple...    31   3.4  
AL445230-2|CAI15004.1| 1233|Homo sapiens coatomer protein comple...    31   3.4  
AL445230-1|CAI15005.1| 1224|Homo sapiens coatomer protein comple...    31   3.4  
BC057255-1|AAH57255.1|  974|Homo sapiens KIAA0423 protein protein.     31   5.9  
AB007883-1|BAA24853.2| 1723|Homo sapiens KIAA0423 protein.             31   5.9  

>AK124779-1|BAC85944.1|  163|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42789 fis, clone BRAWH3007221. ).
          Length = 163

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -2

Query: 698 YLFRCSVSPVCRPRC*CV*QSLASRMRL---TLFLSHVFSHLSVEPCTRLSVRGSLF 537
           +LF  S S    P   C+  SL+  + L   +LFL+H F +L+  PC RLSV  SLF
Sbjct: 55  FLFSVSPSDHLTPLACCLASSLSPFLSLFVSSLFLTH-FLYLAASPCFRLSV--SLF 108


>U24105-1|AAB70879.1| 1224|Homo sapiens coatomer protein protein.
          Length = 1224

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>BC038447-1|AAH38447.1| 1233|Homo sapiens COPA protein protein.
          Length = 1233

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>AL513282-3|CAI12455.1| 1233|Homo sapiens coatomer protein complex,
           subunit alpha protein.
          Length = 1233

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>AL513282-2|CAI12454.1| 1224|Homo sapiens coatomer protein complex,
           subunit alpha protein.
          Length = 1224

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>AL445230-2|CAI15004.1| 1233|Homo sapiens coatomer protein complex,
           subunit alpha protein.
          Length = 1233

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>AL445230-1|CAI15005.1| 1224|Homo sapiens coatomer protein complex,
           subunit alpha protein.
          Length = 1224

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N S+ W V   RG     VS     P+     ++ E  ++++    +  G  TFR   D
Sbjct: 234 MNESKAWEVDTCRGH-YNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHD 292

Query: 338 TFWIFGGHP 364
            FW+   HP
Sbjct: 293 RFWVLAAHP 301


>BC057255-1|AAH57255.1|  974|Homo sapiens KIAA0423 protein protein.
          Length = 974

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 358 PSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKTLCRQ---IRLSHQTTICTRRHVEEG 528
           PS+   R + L+    T + L  N+  S+ C      R    I  S+  TICTRR +  G
Sbjct: 594 PSSAGGRSNHLAHGADTDWLLAGNRTQSAHCHCGDHVRDSMHIYGSYSPTICTRRVLSAG 653

Query: 529 *RKNKEP 549
             KNK P
Sbjct: 654 KGKNKLP 660


>AB007883-1|BAA24853.2| 1723|Homo sapiens KIAA0423 protein.
          Length = 1723

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 358 PSTNSARPSGLSTMNRTYYALFWNQDSSSKCELKTLCRQ---IRLSHQTTICTRRHVEEG 528
           PS+   R + L+    T + L  N+  S+ C      R    I  S+  TICTRR +  G
Sbjct: 597 PSSAGGRSNHLAHGADTDWLLAGNRTQSAHCHCGDHVRDSMHIYGSYSPTICTRRVLSAG 656

Query: 529 *RKNKEP 549
             KNK P
Sbjct: 657 KGKNKLP 663


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,299,869
Number of Sequences: 237096
Number of extensions: 2878655
Number of successful extensions: 6924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6923
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)