Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00630
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g42430.1 68414.m04893 expressed protein                             33   0.15 
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha...    33   0.27 
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha...    33   0.27 
At1g71240.1 68414.m08222 expressed protein contains Pfam profile...    32   0.36 
At3g28560.1 68416.m03566 hypothetical protein similar to mitocho...    31   1.1  
At2g16760.1 68415.m01922 expressed protein                             28   7.7  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    28   7.7  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   7.7  
At1g06630.1 68414.m00700 F-box family protein contains F-box dom...    28   7.7  

>At1g42430.1 68414.m04893 expressed protein
          Length = 435

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 303 SQAQALFAPKKTRFGSSVAIHKLRETKWFKHDE 401
           S A +L   K  RFG   + H+LR TKWFK D+
Sbjct: 7   SSAISLLDIKLRRFGVGASNHELRLTKWFKGDQ 39


>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1218

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N ++ W V   RG  +  VSS     K     ++ E  ++++    +  G  TFR + D
Sbjct: 233 MNETKAWEVDTLRGH-MNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHD 291

Query: 338 TFWIFGGHPQ 367
            FWI   HP+
Sbjct: 292 RFWILAVHPE 301


>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
           putative contains Pfam PF00400: WD domain, G-beta
           repeat; similar to Coatomer alpha subunit (Alpha-coat
           protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
           [Homo sapiens]
          Length = 1216

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 173 LNSSQEW-VQWKRGS*LAGVSSRSSRPKNPSAAADGEGPTVQI----REPGSSTFRPQED 337
           +N ++ W V   RG  +  VSS     K     ++ E  ++++    +  G  TFR + D
Sbjct: 233 MNETKAWEVDTLRGH-MNNVSSVMFHAKQDIIVSNSEDKSIRVWDATKRTGLQTFRREHD 291

Query: 338 TFWIFGGHPQ 367
            FWI   HP+
Sbjct: 292 RFWILAVHPE 301


>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
           PF04842 plant protein of unknown function (DUF639)
          Length = 824

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 21/93 (22%), Positives = 43/93 (46%)
 Frame = +2

Query: 416 RCSGIRIHPRSASSRPFAARFDSLTRLPYVRVAMWKKGKEKTKNPEQIDVYTVQQKGVRK 595
           RC G+R+H R + SR  A+      R P +R+   KK K    +   +     Q     +
Sbjct: 25  RCDGVRVHRRCSFSRNCAS-----NRKPRLRIVAQKKWKLNDIDTNVVQERFSQWVSKSQ 79

Query: 596 RVIKTTLSAFWKQDSVIRINNVDDKQETPNSEK 694
           +++    S   K+   ++  +++D+Q+  + E+
Sbjct: 80  KILSDVTSPLKKKSQSLKKIDLEDQQDFEDLEE 112


>At3g28560.1 68416.m03566 hypothetical protein similar to
           mitochondrial protein-like protein (GI:11559424)
           [Cucumis sativus]
          Length = 257

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 107 HLPRTSRED*EQFLNYRIRELFLN-SSQEWVQWKRGS*LAGVS 232
           +L    RE  E  L  R R+L+ N SS EW+ W+ G+  + VS
Sbjct: 154 YLDHVLREGKEIGLKKRERKLYTNNSSHEWISWRLGTNWSNVS 196


>At2g16760.1 68415.m01922 expressed protein
          Length = 327

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 635 LASRMRLTLFLSHVFSHLSVEPCTRLSVRGSLFFLYPSSTWRRVHM 498
           LA    L + + HV + L V     L  R S    Y  STWRR+ +
Sbjct: 93  LAGNASLGIAIDHVRNRLLVAVADLLGNRYSALAAYDLSTWRRLFL 138


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 233 SRSSRPKNPSAAADGEGPTVQIREPGSSTFR 325
           S SS PK PS    GEG T   R+ G+++FR
Sbjct: 42  SHSSSPKRPSRRNSGEG-TPLWRKTGAASFR 71


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 326  PQEDTFWIFGGHPQTPRDQVV*AR*TEHIMRCSGI 430
            P++   W +GGHP  P    +  +  E +  CS +
Sbjct: 2766 PEKSMLWAYGGHPSLPVSAELFHKQQEFLQLCSTV 2800


>At1g06630.1 68414.m00700 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 403

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = +1

Query: 76  LLYVICRSESTFAANESRRLRTISKLSNSRIVFEFVTGVGSMEARFVTCRSFQQI 240
           +L ++   ++   +  S++ RT+ KL ++    + V+G+G  EA +V   SF+ +
Sbjct: 25  ILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGMGEQEASYVFPESFKDL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,851
Number of Sequences: 28952
Number of extensions: 411143
Number of successful extensions: 1337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)