Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00629
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    91   1e-19
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    31   0.20 
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    29   0.80 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    27   1.8  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   4.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.5  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.9  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 34/44 (77%), Positives = 43/44 (97%)
 Frame = +3

Query: 507 DKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHP 638
           DKFAVGSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHP
Sbjct: 113 DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = +1

Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSG 525
           DRNAYV+ +  DG W  TLVLLR+NRAAT V+WSP E     G
Sbjct: 76  DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG 118



 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +2

Query: 287 QKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 394
           +++GN WK      +HD  V  +DWAP +NRIVTCS
Sbjct: 39  EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS 74


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 287 QKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 394
           +K  +DW+ T  L  H+  V  I W+ N N + TCS
Sbjct: 362 EKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCS 397



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSG 525
           D++ ++W   +D ++    VL    +    V W P E  L+SG
Sbjct: 399 DKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 293 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 388
           +G+DW  T  L  H   V  + ++PN N + +
Sbjct: 453 DGDDWALTCQLQGHTNTVWALAFSPNGNTLAS 484


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 397 DRNAYVWTQGDDGKW-ATTLVLLRINRAATCVKWS 498
           D+N ++WT+  DG W  T L   +    A  V WS
Sbjct: 230 DKNVFIWTKEGDGPWQKTPLTEEKFPDIAWRVSWS 264


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 302 HFLPFVYVNFIIVW*EAI*LLSLFHA*HVIGAH 204
           H +PF+  NF +++ + I   SLFH  H+I  H
Sbjct: 150 HLIPFI--NFFLLYHQIILSHSLFHISHLISFH 180


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 552 YFEKENNWWVSKHIKKPIRSTVTSIDWHPITF 647
           YF+++N W + K  KK ++ ++TS+D   + F
Sbjct: 30  YFDEDNIWDLDK-FKKNLKVSITSLDQETMVF 60


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 385 YVFVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSGQ 528
           Y  VD+ A V   G D  WAT L      RAA  +    + +S L GQ
Sbjct: 318 YTVVDQTAVV--TGSDSMWATYLSQCLPKRAALGILSLTIVSSFLMGQ 363


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 474  SVDTQKNKSSCPFPIISLSPDVSITVNEHVTIRLVLGAQSIPIT--LRSCST 325
            S+ ++K     PFP   +  DVS    +     L++    I +T  +RSC T
Sbjct: 1424 SMRSEKASFEIPFPEEQIDDDVSPVAQDSSLEELLISLDIIDLTSVMRSCQT 1475


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 563 LLKIANGYQSSS*PDSKLVSMGDHFTQVAARLIRRRT 453
           ++ + +G  + S  DS L+   +HF Q ++R   RRT
Sbjct: 282 MVSLVDGMSNGSPEDSPLLVSPNHFLQRSSRTTIRRT 318


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 253 QFDFYPCSMHDMLSARMSHQKLT 185
           QF F PCS+HD+LS+ +   K T
Sbjct: 182 QFPF-PCSLHDVLSSYLYLLKST 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,577
Number of Sequences: 5004
Number of extensions: 63781
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)