Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00629
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 71 6e-13
07_03_1491 + 26953193-26954326 29 4.4
02_01_0283 + 1903869-1904786 29 4.4
07_03_0899 + 22421038-22422642 28 5.9
07_03_0898 - 22403337-22404950 28 5.9
07_01_0972 - 8176013-8176960 28 5.9
03_06_0560 + 34726338-34727243 28 7.7
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851... 28 7.7
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 28 7.7
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 71.3 bits (167), Expect = 6e-13
Identities = 26/44 (59%), Positives = 37/44 (84%)
Frame = +3
Query: 507 DKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHP 638
+KFAVGSGA+ + ICY+E++NNWW+SK ++K S+VTS+ WHP
Sbjct: 71 NKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHP 114
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +1
Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSG 525
DRN+YVWTQ + W TLV+L++NRAA CV+WSP E G
Sbjct: 35 DRNSYVWTQ-EGHDWVPTLVILKLNRAALCVQWSPKENKFAVG 76
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 332 HDLRVMGIDWAPNTNRIVTCS 394
HD V GIDW+ ++N+IVT S
Sbjct: 13 HDQIVSGIDWSRSSNKIVTVS 33
>07_03_1491 + 26953193-26954326
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 432 IISLSPDVSITVNEHVTIRLVLGAQS-IPI-TLRSCSTRLFVCFQSFPSF 289
I SLSP +S+ V V + LVLG S I + +R S F F+ P+F
Sbjct: 15 IWSLSPSLSLVVTTSVALLLVLGGVSGIRVNVIRLPSASPFPAFREAPAF 64
>02_01_0283 + 1903869-1904786
Length = 305
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 284 IQKEGN---DWKQTNNLVEHDLRVMGIDWAPN 370
I KEG+ +W Q + +EH V I WAP+
Sbjct: 83 IWKEGSKPDEWAQAHTFIEHKSSVNSIAWAPH 114
>07_03_0899 + 22421038-22422642
Length = 534
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 402 TVNEHVTIRLVLGAQSIPI---TLRSCSTRLFVCFQSFPSFCICELHYCLVRSNLTSILV 232
TV+ + +G S+P TLR S R + S PS C L Y LV+ + +LV
Sbjct: 215 TVSVAAFVFFSVGFMSLPALAYTLREASWRNMYVWTSLPSLCYAVLLYFLVQESPRWLLV 274
>07_03_0898 - 22403337-22404950
Length = 537
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -1
Query: 369 LGAQSIPI---TLRSCSTRLFVCFQSFPSFCICELHYCLVRSNLTSILV 232
+G S+P TLR S R + S PS C L Y LV+ + +LV
Sbjct: 218 VGFMSLPALAYTLREASWRTMYVWTSLPSLCYAVLLYFLVQESPRWLLV 266
>07_01_0972 - 8176013-8176960
Length = 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Frame = +1
Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSL 516
D +W +G G W+ V + + W+P E L
Sbjct: 80 DGRVIIWKEGAGGHWSQAHVFTDHKSSVNSIAWAPYEVGL 119
>03_06_0560 + 34726338-34727243
Length = 301
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSL 516
D VW +G G+W+ V + + W+P E L
Sbjct: 80 DGRVVVWKEGAAGQWSQAHVFDNHKSSLNSIAWAPYELGL 119
>03_03_0254 +
15884149-15884295,15884765-15884803,15884958-15885136,
15887175-15887310,15887769-15887865,15888448-15888534,
15888621-15888721,15888905-15888939,15889520-15889577,
15889650-15889724,15890048-15890135,15890155-15890308,
15890395-15890638
Length = 479
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 447 SCPFPIISLSPDVSITVNEHVTIRLVLGAQSIPIT 343
SC +P S SP S++ N HV I +V Q + T
Sbjct: 33 SCSWPSSSSSPPSSLSPNNHVKIAVVADPQLMDST 67
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 397 DRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLS 522
D++A +W +DG+ L ++ V WSP + LL+
Sbjct: 251 DKSAIIWKVDEDGELLLKHTLTGHDKPVMMVAWSPDDCQLLT 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,697,461
Number of Sequences: 37544
Number of extensions: 405639
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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