Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00629
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)                    36   0.039
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)                    29   4.5  
SB_46541| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   7.9  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   7.9  

>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
          Length = 498

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -1

Query: 519 QQTCLHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNEHVTIRLVL 367
           Q   LHG   H  +  V T     SCPF I+ ++P+  I VN+H T++++L
Sbjct: 293 QAASLHGDMSHTQKQGVYTAIRDPSCPFKILYVTPE--ILVNDH-TLQMIL 340


>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
          Length = 275

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 453 CSSAYQPSSDLREMVSHGDKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTV 617
           C + YQP S L E +SHG ++ +   +R     + +     ++  ++  PIR  +
Sbjct: 93  CQAGYQPVSRLCEGLSHGSRYVLRVSSRNGVTSFADGSAIRFIEVNVTLPIREAL 147


>SB_46541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 241 RSQIASHQTIMKFTYTKGRK*LEANKQPCGT-RP*SDGD*LGSQHQPYCYVFVDR 402
           +++++ HQ ++  ++ +G      NKQ   T R  S GD        YCY FVDR
Sbjct: 29  KAKLSKHQILLTMSFERG-----LNKQAHNTCRNYSSGD--SPLDHAYCYTFVDR 76


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -1

Query: 408 SITVNEHVTIRLVLGAQSIP---ITLRSCSTRLFVCFQSFPSFCICELHYCLVRSNLTSI 238
           SIT++E VT+R +   + +    IT+  C T   +      +F    LH C+   ++T  
Sbjct: 4   SITLHECVTLRSITLHECVTFRSITMHECVTLRSITLHECVTFWSITLHECVTSRSIT-- 61

Query: 237 LVPCMT 220
           L  C+T
Sbjct: 62  LHECVT 67


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 333 CSTRLFVCFQSFPSFCICELHYCLVRSNLTSILVPCMTC 217
           CS R+ VC+     FC C +  C  R    S  V C +C
Sbjct: 130 CSCRV-VCYSCRVVFCSCRVACCSCRVVCYSCRVACCSC 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,791,693
Number of Sequences: 59808
Number of extensions: 472755
Number of successful extensions: 1134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)