Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00629
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...    87   1e-17
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    30   1.3  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    30   1.3  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    30   1.3  
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    29   3.0  
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    29   3.0  
U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protei...    29   3.9  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    29   3.9  
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical ...    28   5.2  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450...    27   9.1  
AL161712-15|CAC70142.1|  169|Caenorhabditis elegans Hypothetical...    27   9.1  
AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    27   9.1  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    27   9.1  

>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 34/43 (79%), Positives = 41/43 (95%)
 Frame = +3

Query: 507 DKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWH 635
           +KFAVGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DWH
Sbjct: 115 NKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWH 157



 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 45/108 (41%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
 Frame = +1

Query: 211 PITCHAWNKDRSQIA---SHQTIMKFTYTKGRK*LEANKQPCGTRP*SDGD*LGSQHQPY 381
           PITCHAWNKDR+QIA   S   I  F +  G      +       P +  D  G++    
Sbjct: 16  PITCHAWNKDRTQIAVSASSNDIHIFEWRNGDW-QSIHTLSEHDLPVTGLD-WGTKTNRI 73

Query: 382 CYVFVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSG 525
                D+NA+VWT  D   W   LVL+R NRAAT VKWSP+E     G
Sbjct: 74  VSCSQDKNAFVWTF-DKNVWKPELVLVRFNRAATYVKWSPLENKFAVG 120



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 302 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 394
           DW+  + L EHDL V G+DW   TNRIV+CS
Sbjct: 47  DWQSIHTLSEHDLPVTGLDWGTKTNRIVSCS 77


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 468  DTQKNKSSCPFPIISLSPDVSITVNEHVTIRLVLGAQSIPITL 340
            D+    S+ P  ++ L   V+ TVN+H+TI+     Q +P  +
Sbjct: 3888 DSSITSSTRPHFVVPLPERVTHTVNDHITIKCKFSGQPLPAAM 3930


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 468  DTQKNKSSCPFPIISLSPDVSITVNEHVTIRLVLGAQSIPITL 340
            D+    S+ P  ++ L   V+ TVN+H+TI+     Q +P  +
Sbjct: 3888 DSSITSSTRPHFVVPLPERVTHTVNDHITIKCKFSGQPLPAAM 3930


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 468  DTQKNKSSCPFPIISLSPDVSITVNEHVTIRLVLGAQSIPITL 340
            D+    S+ P  ++ L   V+ TVN+H+TI+     Q +P  +
Sbjct: 3888 DSSITSSTRPHFVVPLPERVTHTVNDHITIKCKFSGQPLPAAM 3930


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 299 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 394
           ++W + + ++ H L V  I W P+  R++T S
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVS 627


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 394 RTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 305
           +T+ N +G  +   NPHH  + FH++V  +P
Sbjct: 263 KTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293


>U41746-6|AAA83333.1|  388|Caenorhabditis elegans Mediator protein
           27 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 312 CFQSFPSFCICELHYCLVRSNLTSILVPCM 223
           CF++  S  + E+HYC  R N     VPCM
Sbjct: 246 CFRNSKS--LIEVHYCARRPNSEKEFVPCM 273


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 438  MGNYSCSSAYQPSSDLREMVSHGDKFAVGSGARLISICYFEKE 566
            +G   C S Y+PSSD    V + D++ V S +   + C F+ E
Sbjct: 1918 IGTCLCDSGYEPSSDRSSCVLN-DRYNVRSRSYPKTFCTFDSE 1959


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 305 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSL 397
           W +  +L +H   V G+ +  N   +VTCSL
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSL 483


>AF067942-4|AAG45573.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK6.6 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 571 IGGCLSILRSPFVRL*HLLIGIP 639
           +G C     SPF+ L H +IGIP
Sbjct: 255 LGSCFIFFLSPFLNLYHYVIGIP 277


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 296 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSLTVMLTSG 418
           GN  +  +NL+      +G  W  N +  +TC  T +LT G
Sbjct: 767 GNIEEDLSNLIRASASQIGDTWPENDSEPLTCLNTALLTYG 807


>U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450
           family protein 23A1 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 284 IQKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSLTVML 409
           +Q +GN W++      H LR  G+   P   +++T  +T ++
Sbjct: 142 VQIDGNKWREQRRFALHTLRDFGVG-KPLMEQMITLEVTSLM 182


>AL161712-15|CAC70142.1|  169|Caenorhabditis elegans Hypothetical
           protein Y66D12A.19 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 596 LNMLRHPPIIFLLKIANGYQSSS*PDSKLVSMGDHFTQVAARLIRRRTRVVAHFPSSP 423
           ++ LR P ++ +L  ++    +  P+ K ++  D F  V  RL+ +       FP +P
Sbjct: 87  ISRLRKPKLLSMLP-SDAAAGAKDPEIKFITRRDSFRNVTVRLVLKEQPKSTLFPDAP 143


>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 501 HGDKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHP 638
           +G   A  S    I I  ++  +N W+S  I+K     V S+ W P
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAP 162


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 501 HGDKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHP 638
           +G   A  S    I I  ++  +N W+S  I+K     V S+ W P
Sbjct: 117 YGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAP 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,475
Number of Sequences: 27780
Number of extensions: 362863
Number of successful extensions: 847
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)