Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00629
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.16 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 391 FVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMETSLLSG 525
           F+D +  +W   +DGK       L+ +     V++SPME + L G
Sbjct: 3   FID-DELLWCPDNDGKMVDLTQCLQESSTGQSVEFSPMELNALVG 46


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 465 YQPSSDLREMVSHGDKF-AVGSGARLISI 548
           +QP  ++R  V+ GDK    GS A   SI
Sbjct: 765 FQPDKNIRRKVTMGDKSKKQGSSAGTSSI 793


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 465 YQPSSDLREMVSHGDKF-AVGSGARLISI 548
           +QP  ++R  V+ GDK    GS A   SI
Sbjct: 855 FQPDKNIRRKVTMGDKSKKQGSSAGTSSI 883


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,253
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)