Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00627
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    33   0.033
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   3.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   3.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.6  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +1

Query: 34  YVPQQENEV--YYPQQPENPIFSPTQATELADP 126
           Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 511 YIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 321 PRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATP 455
           P V    F P  F    + A V  +RP +P  +   E + P  TP
Sbjct: 435 PNVAAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTP 479


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 195 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 106
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 387 GPLRPYLPIRRTLGRTRMWALWVVRS 310
           G L  +LP RRT G  ++WA + V +
Sbjct: 844 GSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 28  TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 156
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 46  QENEVYYPQQPENPIFSPTQATELADPTE 132
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,265
Number of Sequences: 5004
Number of extensions: 45237
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)