Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00627
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0751 + 19927164-19927835,19927926-19928663 36 0.026
01_01_0194 - 1684427-1684810 32 0.42
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 31 0.55
06_01_0773 - 5784722-5784811,5784888-5784923,5785003-5785104,578... 30 1.3
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 30 1.7
09_04_0749 + 19919367-19920869 29 3.0
07_03_0743 - 21118619-21119071 29 3.0
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 29 3.0
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 3.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 3.9
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 29 3.9
12_02_1174 - 26696869-26698191 28 5.2
09_06_0264 - 21929086-21931368 28 5.2
06_01_1176 + 10112257-10113126 28 5.2
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 28 5.2
11_06_0611 + 25461469-25461655,25461670-25462238 28 6.8
07_03_1157 - 24419157-24419948 28 6.8
05_03_0592 + 15909437-15911002 28 6.8
02_05_0100 - 25821606-25822349 28 6.8
01_05_0534 + 22999876-23000333,23000835-23000949 28 6.8
01_05_0490 + 22672241-22674679 28 6.8
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 6.8
09_03_0011 - 11509759-11509906,11511131-11511426 27 9.0
06_03_0475 - 21217253-21217639,21217717-21218757 27 9.0
03_04_0162 + 17858802-17861168 27 9.0
>09_04_0751 + 19927164-19927835,19927926-19928663
Length = 469
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -2
Query: 453 AWLVATPPRPVLYALATAVGPPGPLRPYLPIRRTLGRTRMWALWVVRSHLLPRLPQ 286
AWL A PPR V Y +V P P + + L T LWVVR+ ++P+
Sbjct: 270 AWLEARPPRTVAYVSFGSVATPSPAQ-MAEVAEGLYNTGKPFLWVVRASETSKIPE 324
>01_01_0194 - 1684427-1684810
Length = 127
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = +3
Query: 318 PPRVPTSAFFPMFFGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
PPR P A+ P F W A P+ P P A E + ATPP P N +P
Sbjct: 56 PPRAP--AWRPSF-SWEDFADAPPKQAPPPPQQPADHERVAENATPPRRPAPGLDLNVEP 112
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 31.5 bits (68), Expect = 0.55
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 478 RSGSTVGGGVACGDASSTCAVCVGNCGR 395
++G ++G GD S C+V VG CGR
Sbjct: 71 KAGRSLGSASGGGDCSLVCSVLVGGCGR 98
>06_01_0773 -
5784722-5784811,5784888-5784923,5785003-5785104,
5785154-5785213,5785988-5786068,5786069-5786113,
5786870-5786944,5787383-5787445,5787531-5787971
Length = 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 441 ATPPRPVLYALATAVGPPGP 382
A PPRP L A+ + PPGP
Sbjct: 64 AAPPRPALAAVTASAAPPGP 83
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -2
Query: 435 PPRPVLYALATAVGPPGPLRPYLPI--RRTLGRTRMWAL 325
PP P PPGP RP P+ R RTR W L
Sbjct: 438 PPGPARPGKPLGRRPPGPARPGKPLGRRPDFARTRRWRL 476
>09_04_0749 + 19919367-19920869
Length = 500
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 450 WLVATPPRPVLYALATAVGPPGPLRPYLPIRRTLGRTRMWALWVVRSHLLPRLP 289
WL A P V+YA ++ PGP + L + LWVVR+ +LP
Sbjct: 299 WLDARPAGSVVYASFGSIAAPGP-ETMAEVAEGLYSSGSPFLWVVRATETGKLP 351
>07_03_0743 - 21118619-21119071
Length = 150
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -1
Query: 484 FIRSGSTVGGGVACGDASSTCA---VCVGNCGRASGTTAALPPHPKNIG 347
F R G GG + G+ CA V G CG +G+ +A P P +G
Sbjct: 32 FDRRGGRRDGGESGGERCDACAPVGVGWGRCGDGAGSCSASCPRPAVLG 80
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 447 LVATPPRPVLYALATAVGPPGPLRPYLPIRRTLGRTR 337
L PP P ++L+ + PP P P P RRTLG+ R
Sbjct: 50 LATAPPLPP-WSLSPSPSPPPP--PTKPSRRTLGKAR 83
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 357 FGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 488
+G + +VP R LP AQ++E +P A + P +N
Sbjct: 533 YGGVNSSGIVPSPRSALPPKLAQIKEKAPTANAESSDQPSDNQN 576
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 357 FGWGGRAAVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 488
+G + +VP R LP AQ++E +P A + P +N
Sbjct: 838 YGGVNSSGIVPSPRSALPPKLAQIKEKAPTANAESSDQPSDNQN 881
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 366 GGRAAVVPEARPQLPTHTAQVEEASPQATPP 458
G + A++ ++ TH A E+++P+ TPP
Sbjct: 141 GTKVAIISKSAAPAETHVAPSEDSTPKETPP 171
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 387 PEARPQLPTHTAQVEEASPQATPPPTVDPDRM 482
P P+ P T V E PQ PPP P +M
Sbjct: 226 PTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKM 257
>09_06_0264 - 21929086-21931368
Length = 760
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 13 QTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKI 138
+TLAD +P+ E E +P++ +SP+Q +PT +
Sbjct: 699 KTLADKLQMPEPEPEPEREPEPKSGPYSPSQEIVQGEPTATV 740
>06_01_1176 + 10112257-10113126
Length = 289
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 460 GGGVACGDASSTCAVCVGNCGRASGTTAALPPHP 359
GGG CG S A G G SG+TA+ P
Sbjct: 98 GGGGGCGHRDSKSARSAGGGGDGSGSTASATATP 131
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +3
Query: 39 TATRKRSLLPSATREPDLQ--PH 101
T +++ SLLPS REPDL+ PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145
>11_06_0611 + 25461469-25461655,25461670-25462238
Length = 251
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 414 ALATAVGPPGPLRPY--LPIRRTLGRTRMWALWVVRSHLLPRLPQEAS 277
A A AVGPP P P L I R G + A+ R PRLP AS
Sbjct: 136 ATAAAVGPPPPPFPQSGLQIWRREGAPTIHAVAPPRRPPPPRLPSRAS 183
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 381 VVPEA-RPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
VVPE +P+LP H E + P P V P+ K+ +P
Sbjct: 84 VVPELPKPELPPHPVVPELPKHEEPPHPAVVPELPKHEEP 123
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 AVVPEA-RPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
A VPE +P+LP H A V E PP V P+ K+ +P
Sbjct: 184 AAVPELPKPELPPHPA-VPELPKHEEPPHPVVPELPKHEEP 223
>05_03_0592 + 15909437-15911002
Length = 521
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -2
Query: 327 LWVVRSHLLPRLPQEASSPVSSY*HSLLRLGLLNFEYFRLW*FRSGRRFGSLGNRYQSGG 148
LWV+ + + V + +L LGLL Y W R RRFG L R+ GG
Sbjct: 325 LWVLNVAAMNIRDEAVGDAVGAVAVALCALGLL---YGGYWRARMRRRFGLLPGRHGGGG 381
>02_05_0100 - 25821606-25822349
Length = 247
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 481 IRSGSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIGKNADVGTLGGAK 311
+R G GGG G + G G A+ TA P H + + ADVG + G +
Sbjct: 144 VRGGG--GGGTFRGRGGRFPSRRPGASGAAAPETAGEPGHGQGVAPGADVGGVVGVR 198
>01_05_0534 + 22999876-23000333,23000835-23000949
Length = 190
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 399 PQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 497
P L V+ A+P ++PPP+ DP+ + P
Sbjct: 67 PTLSQPPTPVKPAAPSSSPPPSQDPEPKQAAAP 99
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 423 QVEEASPQATPPPTVDPDR 479
+VEE +P ATPPP P R
Sbjct: 455 RVEEVAPAATPPPPARPRR 473
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 447 LVATPPRPVLYALATAVGPPGPLRPYLPIRRTLGRTR 337
L A PP P + PP P P P RRTLG+ R
Sbjct: 50 LAAAPPLPPRSPSPSPSPPPPP--PTKPSRRTLGKAR 84
>09_03_0011 - 11509759-11509906,11511131-11511426
Length = 147
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 366 GGRAAVVPEARPQLPTHTAQVEEAS 440
GGR VVP RP+ PT E S
Sbjct: 95 GGRGTVVPYLRPEFPTFPTTSEAVS 119
>06_03_0475 - 21217253-21217639,21217717-21218757
Length = 475
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/53 (26%), Positives = 19/53 (35%)
Frame = -1
Query: 475 SGSTVGGGVACGDASSTCAVCVGNCGRASGTTAALPPHPKNIGKNADVGTLGG 317
+ + GG +C S CG +SG T A + A G GG
Sbjct: 83 AAAAAGGAESCSTVHSVLGSVEFGCGTSSGVTIAQASRMGRLAGEAPCGDAGG 135
>03_04_0162 + 17858802-17861168
Length = 788
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 384 VPEARPQLPTHTAQVEEASPQATPPP 461
+PEA+ PT T + +S A PPP
Sbjct: 673 IPEAQLNYPTITVPLPRSSSSAAPPP 698
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,707
Number of Sequences: 37544
Number of extensions: 368794
Number of successful extensions: 1942
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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